Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0005 ATGCTGCGCAATGGCACCCTACCAGATAACTATTCCTTCCCTTTCGTCCTCAAAGCTTGCGCTCGACTCTCCCTTCTCCACAAAGGGCGTGAAATTCATTCTTCCACCCTTAAATTGGGGGTCCATCTGGATGTTTTCGTGCAAAATGCGCTCATATCTGCGTTTTCTTCTTGTGGCGCGGTTGAAGCAGCTCGTGCCGTGTTTGATATGCTTCCGGCTTTAGTTCGAGATGTAGTATCTTGGAATAGTATGATCTCTGGATATCTGCAGAGCCATCGCTACGAGCTAGCGTTGAAGGTTTTCGACAGAATTCCGCATAGAAATACAGTGTGTTGGACTTCTATGATAGCTGGGTATGCCCAATCGGATCTATTTAAGGAAGCAATTGAGTTGTTCAGGGAAATGCAGATTGGTGGGTTTGCAGCAGATGCAGCAACAATTGCTTGTGTCCTTTCGGCATGCGGTCATTGGGGTGCTCTGGCTCAGGGGAGATGGATTCATTTATACTGTGAAAGAAACAGCATTGAGATGGACCTCAACGCGAGGAACGCTTTGATAGGTATGTATTCGAAGTGTGGAGATATCCAAAAAGCACTTGAAATCTTTCATGGGTTGACTCAGCCAGATATATTTTCATGGAGTGCAGTGATTTCTGGCCTTGCCATGAATGGAGAATCTGATAAAGCACTGCACTTGTTCTCACAAATGGAAATGATTTCTGATATCAGGCCGAATGAGATCACCTTCCTTGGCGTGTTGTGTGCTTGTAACCATGGTGGATTTGTGGATAAAGGCCTTTATTATTTTAATGCCATGACTCAAATTTACAACCTCACTCCCGGTATTGAACACTACGGTTGTATGGTTGACCTTCTTGGCCGCGCTAACCTATTGGTTGAGGCCGAGAAGTTCATCCGGACACTACCCATTCAACCTGATGTGGTTATATGGCGATCCCTGCTTTTTGCCTGTCGGAATCATGGGAATATAGAACTGGCAGAGTTTGCAGCCAAACAAATTGAGGAATTGGAACCAAGAAGGTGCGGTGCTCGTGTTCTTTTGTCTAATGTTTATGCTTCAGCCTCAAGGTGGGGTGATGTGAAGAGGGTGAGGAAAGATATGGCTACTCAAAGAATCAAGAAGCAGCCGGGCTGTTCTTTTGTTGAAATAGATGGCCTTGTTCATGAGCTTTTTGTTGCAGATCGTTCACATCCTGAAATGGGTGCCATATATGAGACGATGATTAGCATCAACAAGGCTCTTCAGTCCAAAGGGTTTGATCCAGGTATCTTAGATCATCAAGAACAGTGA 1311 0.4508 MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISINKALQSKGFDPGILDHQEQ* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0005 436 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 428 IPR046960 GO:0003723|GO:0009451
Vvi17g0005 436 FunFam Pentatricopeptide repeat-containing protein At1g31430 183 393 - -
Vvi17g0005 436 Pfam PPR repeat family 208 256 IPR002885 -
Vvi17g0005 436 Pfam PPR repeat family 107 154 IPR002885 -
Vvi17g0005 436 Pfam PPR repeat 183 203 IPR002885 -
Vvi17g0005 436 Pfam PPR repeat 49 70 IPR002885 -
Vvi17g0005 436 Pfam PPR repeat 79 105 IPR002885 -
Vvi17g0005 436 Gene3D Tetratricopeptide repeat domain 207 395 IPR011990 GO:0005515
Vvi17g0005 436 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 107 IPR002885 -
Vvi17g0005 436 Pfam E motif 327 389 IPR046848 -
Vvi17g0005 436 Gene3D Tetratricopeptide repeat domain 1 73 IPR011990 GO:0005515
Vvi17g0005 436 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 239 IPR002885 -
Vvi17g0005 436 FunFam Pentatricopeptide repeat-containing protein chloroplastic 31 178 - -
Vvi17g0005 436 SUPERFAMILY TPR-like 80 366 IPR011990 GO:0005515
Vvi17g0005 436 Gene3D Tetratricopeptide repeat domain 74 206 IPR011990 GO:0005515
Vvi17g0005 436 NCBIfam pentatricopeptide repeat 79 104 IPR002885 -
Vvi17g0005 436 NCBIfam pentatricopeptide repeat 211 246 IPR002885 -
Vvi17g0005 436 NCBIfam pentatricopeptide repeat 110 143 IPR002885 -
Vvi17g0005 436 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0005 Vvi-Chr17 37072 38595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0005 53 428 Glycoside Hydrolase AT3G49170 35.171 3.15e-80 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0005 - - vvi:100254316 645.966