Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0002 ATGGCCCCTTCTCTGCTCTCTATCTCTCAATCTCTCCTCTATCCTGGAATCGCTCCACAACCGCGCTCTGGCAACCTTGATCGTCCACACGAAGATTTTGGGGTGGGGAGGATGTCAGGGGCGGGGCAAGCCGTGGAGCGGGTGGGGTTTGGGAAGATGGAGAAGAGGCGTGCATCTTCAGACTCAGAGTCAGAAACAGGGTGCTGCAACCCAGTGAGAAAGGGAGGGCCTGTGGGTATGGACCATGTTCTTTTGGCACTGCAAGAATCCAAGGAAGAGAGGGATGTTCGAATTCGAAGCCTTTTCAATTTTTTTGACTCGGCCAATCTCGGATATTTGGACTATGCCCAGATCGAGGGTGGCCTCTCTGCCCTTCAAATTCCTCCTGAGTACAAGTACGCCAAGGATCTTTTAAAGGTATGCGATTCCAATAGCGATGGGCGTGTTGATTATCAAGAGTTCCGCCGCTATATGGATGATAAAGAACTCGAGCTTTACCGCATCTTCCAAGCTATTGATGTCAAACACAATGGCTGCATTTTGCCTGAAGAGCTGTGGGATGCCCTTCTCAAGGCTGGGATTGAAATTGACGATGAGGAGCTTGCCCGTTTTGTGGAAAATGTTGATAAGGATAACAATGGAATTATAACTTTTGAAGAATGGAGAGATTTTCTTCTGCTCTATCCCCATGAGGCAACCATAGAAAATATCTATCAGTACTGGGGAAGGGTATGCCTTGTAGATATTGGTGAACAGGCTGTTATTCCGGAAGGCATAAGCAAGCACGTACATGCAAGCAAATATTTGCTTGCTGGGGGAGTAGCAGGAGCTGCTTCTCGTACTGCAACTGCTCCTCTTGATCGCCTAAAGGTGGTTTTGCAAGTACAGACTACACATGCTCGCATTGTTCCAGCCATAAAGAACATATGGAAGGAAGGTGGTTTATTGGGGTTTTTCCGAGGTAATGGATTAAATGTTGTGAAAGTTGCACCAGAAAGTGCCATCAAGTTTTACACATATGAAATGTTTAAAAATGTCGTTAGAGATGCTAAAGGGGAAGCGAAGGATGATATAGGTGCTGCTGGCAGACTTTTTGCTGGTGGTATGGCAGGTGCTGTGGCACAAACTGCTATTTATCCATTAGATCTTGTGAAGACTCGGTTACAGACGTATACTTGTGAAGGTGGAAAGGTTCCTTATTTGAAAACACTGGCAAGGAATATATGGTTTCAGGAGGGACCTCAAGGCTTTTATAGAGGTCTTGTACCATCTGTTCTTGGGATCATACCTTATGCTGGAATTGACCTTGCTGCATATGAGACCTTGAAAGATATGTCAAAGACATATCTGCTTCATGATAGTGAACCTGGACCTCTTGTACAACTGGGTTCTGGGACAATTTCAGGGGCTCTTGGAGCAACATGTGTTTATCCATTGCAGGTTATTAGAACAAGAATGCAAGCTCAACGTACTAATACGGATGCTTCTTACAATGGAATGTCTGATGTATTTCGGAGAACCCTTCAACATGAAGGTTTTAGAGGTTTCTACAAGGGACTCTTTCCAAATCTTCTCAAAGTTGTGCCATCTGCAAGCATTACATATCTGGTTTATGAAACAATGAAAAAAAGTCTAGATCTTGATTAG 1647 0.4469 MAPSLLSISQSLLYPGIAPQPRSGNLDRPHEDFGVGRMSGAGQAVERVGFGKMEKRRASSDSESETGCCNPVRKGGPVGMDHVLLALQESKEERDVRIRSLFNFFDSANLGYLDYAQIEGGLSALQIPPEYKYAKDLLKVCDSNSDGRVDYQEFRRYMDDKELELYRIFQAIDVKHNGCILPEELWDALLKAGIEIDDEELARFVENVDKDNNGIITFEEWRDFLLLYPHEATIENIYQYWGRVCLVDIGEQAVIPEGISKHVHASKYLLAGGVAGAASRTATAPLDRLKVVLQVQTTHARIVPAIKNIWKEGGLLGFFRGNGLNVVKVAPESAIKFYTYEMFKNVVRDAKGEAKDDIGAAGRLFAGGMAGAVAQTAIYPLDLVKTRLQTYTCEGGKVPYLKTLARNIWFQEGPQGFYRGLVPSVLGIIPYAGIDLAAYETLKDMSKTYLLHDSEPGPLVQLGSGTISGALGATCVYPLQVIRTRMQAQRTNTDASYNGMSDVFRRTLQHEGFRGFYKGLFPNLLKVVPSASITYLVYETMKKSLDLD* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0002 548 ProSitePatterns EF-hand calcium-binding domain. 209 221 IPR018247 -
Vvi17g0002 548 SMART efh_1 133 161 IPR002048 GO:0005509
Vvi17g0002 548 SMART efh_1 97 125 IPR002048 GO:0005509
Vvi17g0002 548 SMART efh_1 200 228 IPR002048 GO:0005509
Vvi17g0002 548 SMART efh_1 164 192 IPR002048 GO:0005509
Vvi17g0002 548 FunFam Mitochondrial substrate carrier family protein 69 163 - -
Vvi17g0002 548 MobiDBLite consensus disorder prediction 53 72 - -
Vvi17g0002 548 FunFam Calcium-binding mitochondrial carrier protein SCaMC-1 176 251 - -
Vvi17g0002 548 SUPERFAMILY EF-hand 84 261 IPR011992 -
Vvi17g0002 548 Pfam EF-hand domain pair 164 223 IPR002048 GO:0005509
Vvi17g0002 548 ProSiteProfiles EF-hand calcium-binding domain profile. 196 231 IPR002048 GO:0005509
Vvi17g0002 548 MobiDBLite consensus disorder prediction 18 37 - -
Vvi17g0002 548 PRINTS Mitochondrial carrier protein signature 373 391 IPR002067 GO:0055085
Vvi17g0002 548 PRINTS Mitochondrial carrier protein signature 268 281 IPR002067 GO:0055085
Vvi17g0002 548 PRINTS Mitochondrial carrier protein signature 321 341 IPR002067 GO:0055085
Vvi17g0002 548 PRINTS Mitochondrial carrier protein signature 281 295 IPR002067 GO:0055085
Vvi17g0002 548 PRINTS Mitochondrial carrier protein signature 418 436 IPR002067 GO:0055085
Vvi17g0002 548 PRINTS Mitochondrial carrier protein signature 465 487 IPR002067 GO:0055085
Vvi17g0002 548 Pfam EF hand 136 156 IPR002048 GO:0005509
Vvi17g0002 548 SUPERFAMILY Mitochondrial carrier 261 540 IPR023395 -
Vvi17g0002 548 Gene3D - 84 239 - -
Vvi17g0002 548 ProSiteProfiles EF-hand calcium-binding domain profile. 165 195 IPR002048 GO:0005509
Vvi17g0002 548 PANTHER SOLUTE CARRIER FAMILY 25 221 545 - -
Vvi17g0002 548 FunFam Mitochondrial substrate carrier family protein 259 546 - -
Vvi17g0002 548 ProSiteProfiles Solute carrier (Solcar) repeat profile. 263 346 IPR018108 -
Vvi17g0002 548 ProSiteProfiles Solute carrier (Solcar) repeat profile. 358 445 IPR018108 -
Vvi17g0002 548 ProSitePatterns EF-hand calcium-binding domain. 142 154 IPR018247 -
Vvi17g0002 548 ProSiteProfiles EF-hand calcium-binding domain profile. 129 164 IPR002048 GO:0005509
Vvi17g0002 548 Gene3D Mitochondrial carrier domain 259 546 IPR023395 -
Vvi17g0002 548 ProSiteProfiles Solute carrier (Solcar) repeat profile. 456 544 IPR018108 -
Vvi17g0002 548 Pfam Mitochondrial carrier protein 263 348 IPR018108 -
Vvi17g0002 548 Pfam Mitochondrial carrier protein 457 545 IPR018108 -
Vvi17g0002 548 Pfam Mitochondrial carrier protein 357 447 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0002 Vvi-Chr17 23971 30276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0002 52 548 EF-hand Containing Proteins AT5G51050 74.900 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0002 K14684 - vvi:100249302 1037.71