Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1356 ATGATGAAGTACTATTCTTTTGTTTTTTGCATTGCCTTTTCATTTTGGTTCAGGATCTGCCTGGCAGACAGTGATAATCTTCAGGACGCTTGTCCTACAGCTACAACTGGACAGCAGCAAACTGTCTTCTTTAACGGCCTTCCTTGCAAAAATCCAACCAACATCATTGCTTCCGACTTCAAAACATCAAAACTGAATCACGGTGGCGATACTGACAACTTCTTCCGTTCATCCACCACCCTCATCACTGCCGCAGATTTTCCAGGCCTAAATACTCTTGGCCTCTCAATTGCCAGAACCGACCTGGATGTGGATGGCATGGTCACGCCTCATGCTCACCCAAGGGCTTCTGAGATGTTCTTCGTTAGAAAAGGTGCCGTGGTTGCTGGTTTTATCGATACCAAAAACCAGGTGTTCCAAAAGCTTCTGAAGGAGGGGGATGTGTTTGTATTCCCTCGTGGTTTACTCCACTTTTGTTTGAATGCTGGTTATGAACTCGCTGTTGTTTTCTCGGTGCTCAACAGTCAGAACCCGGGTATGGTGAGCGTCACAGACGCCATGTTTGAACCTGAGTCAGATGCTATCAAGATGCTAATCGGAAGAATAATCTCTACGACATTGGGGGCCAATCTTATGCAAAATGTGACCTTGGATGGATTTCACCATTTATGA 672 0.4554 MMKYYSFVFCIAFSFWFRICLADSDNLQDACPTATTGQQQTVFFNGLPCKNPTNIIASDFKTSKLNHGGDTDNFFRSSTTLITAADFPGLNTLGLSIARTDLDVDGMVTPHAHPRASEMFFVRKGAVVAGFIDTKNQVFQKLLKEGDVFVFPRGLLHFCLNAGYELAVVFSVLNSQNPGMVSVTDAMFEPESDAIKMLIGRIISTTLGANLMQNVTLDGFHHL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1356 223 Gene3D Jelly Rolls 22 205 IPR014710 -
Vvi16g1356 223 PRINTS Germin signature 111 131 IPR001929 GO:0030145
Vvi16g1356 223 PRINTS Germin signature 174 189 IPR001929 GO:0030145
Vvi16g1356 223 PRINTS Germin signature 141 161 IPR001929 GO:0030145
Vvi16g1356 223 Pfam Cupin 76 187 IPR006045 -
Vvi16g1356 223 CDD cupin_OxOx 23 213 IPR001929 GO:0030145
Vvi16g1356 223 SUPERFAMILY RmlC-like cupins 37 189 IPR011051 -
Vvi16g1356 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 21 190 - -
Vvi16g1356 223 SMART Cupin_1_3 63 215 IPR006045 -
Vvi16g1356 223 ProSitePatterns Germin family signature. 106 119 IPR019780 GO:0030145
Vvi16g1356 223 FunFam germin-like protein subfamily 2 member 1 22 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1356 Vvi-Chr16 22015221 22015892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1356 46 200 Miscellaneous Gene Families AT1G72610 43.871 1.83e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1356 - - vvi:100248580 454.907