Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1354 ATGTCCATTGCCAGTGTCTCTGTTAGTCCAGTCTGTGAAGACTCTCCAAATTTTCCATGTTATTTTACCGACCGATGTGGTCCATGCCTGAGCAATTCAATCTTGATATACTTAACTGTTGGTGGGTCTGTGATTCCCATGCATGTTTTAGAGTCAGATTCAATCGCTTCTGTGAAGCGGAAAATCCAGACCTTCAAAGGGTCTTTTGTGAAAATGCAGAAACTGGTTTTTGAAGGGAGAGAATTGGCTCGGAACAATTCTCGTGTCCAGGACTATGGAGTCACTGATGGGAATGTACTTCATTTGGTGCTGAGGCTTTCTGATCTCCAAGCTATTACCGTTAGATCCGTGTGTGGAAAGGAGCTTGAGTTTCAAGTTGAGAGGAGTAGGAATGTGGGGTATGTGAAGCAGCAGATTGCTAAGACGGGAAAAGGTTTTTTTGATCTCAAGGATCAGGAGCTGACCTGTGATGGTGAGGAGCTTGAAGATCAGAGACTCATACATGATATCTGTAAAAAGAATGATGTTGTGATTCATTTGCTGATCTGTAGGTCTGCAAAAGTAAGGACTAAACCCATTAAGAAAGATTTCAAAGTGTCCATTGTGGCATCTGATTTGAGTGATAAGAGGGATGATGTAGTTGATAAAGAAGAATACCAGTGGAGGACACAATCTAAGGAACCAGAGGTTGTAGATAGGAAGTCATTGCTAAGTGATGTCCTCCTGGAACCCTTGATTGTTAATCCCAACATTGAACTGTCATCAGTGGTTAAAGAGCTAATTACCTCTACGATCGATGGGTTAAACAGAGGCAATCAACCAATTAGGTCTTCAGAAGGATCAGGAGGAGTTTATTTTATGCAAGACTCATCTGGTCTGAAGCATATTTCTGTATTTAAGCCAATTGATGAGGAGCCTATGGCTGTGAATAATCCACATGGGCTACCCTTGTCAATGGATGGTGAGGGACTGAAGAAGGGCACACGAGTAGGAGAAGGGGCATTGAGAGAGGTTGCTGCATACATTTTGGATCACCCAAGAAGTGGACCTCACTCATTTTGTAACAAGAAGGGCTTTGCTGGGGTTCCACCTACAGTCATGGTCAAGTGCTTGCATGGGGGATTCAACCATCCAGAAGGGTATGAATATTCACCTAAGAATATCAAGATTGGTTCATTGCAGATGTTCATGAAGAACCAAGGAAGCTGTGAGGACATGGGCCCTCGTGCATTTCCAGTGGATGAGGTGCACAAGATCACCGTGTTGGATATAAGGTTGGCGAATGCAGATAGACATGCTGGGAACATTTTGGTTAGCAAAGAGGGTGAAGGTCAGCTTGTGCTTATTCCAATTGATCATGGATACTGTTTGCCTGAGAATTTTGAGGATTGCACATTCGACTGGCTCTACTGGCCTCAAGCAAAAATCCCATACTCTCCAGATACCATTGACTACATAAGATCACTTGATGCAGAAAAAGATATTGAACTTCTGAAGTTTCATGGGTGGAATTTGCCACTTGAGTGTGCTCGCACCCTTCGCATTTCTACCATGCTTCTGAAGAAAGGTGCTGAGAGAGGACTGACTCCTTTCATCATTGGAAGCATAATGTGCAGGGAGACCTTGAAGAAGGAATCCGTAATGGAGCAGATAGTCCAAGAAGCACAAGAATCTGTGCTTCCTGGAACTAGCGAAGCTGCATTCCTTGAAGCTGTCTCTATGATCATGGATTGCCGCCTTGATGAGCTGTCTCCATAA 1758 0.4369 MSIASVSVSPVCEDSPNFPCYFTDRCGPCLSNSILIYLTVGGSVIPMHVLESDSIASVKRKIQTFKGSFVKMQKLVFEGRELARNNSRVQDYGVTDGNVLHLVLRLSDLQAITVRSVCGKELEFQVERSRNVGYVKQQIAKTGKGFFDLKDQELTCDGEELEDQRLIHDICKKNDVVIHLLICRSAKVRTKPIKKDFKVSIVASDLSDKRDDVVDKEEYQWRTQSKEPEVVDRKSLLSDVLLEPLIVNPNIELSSVVKELITSTIDGLNRGNQPIRSSEGSGGVYFMQDSSGLKHISVFKPIDEEPMAVNNPHGLPLSMDGEGLKKGTRVGEGALREVAAYILDHPRSGPHSFCNKKGFAGVPPTVMVKCLHGGFNHPEGYEYSPKNIKIGSLQMFMKNQGSCEDMGPRAFPVDEVHKITVLDIRLANADRHAGNILVSKEGEGQLVLIPIDHGYCLPENFEDCTFDWLYWPQAKIPYSPDTIDYIRSLDAEKDIELLKFHGWNLPLECARTLRISTMLLKKGAERGLTPFIIGSIMCRETLKKESVMEQIVQEAQESVLPGTSEAAFLEAVSMIMDCRLDELSP* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1354 585 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 43 558 IPR044571 -
Vvi16g1354 585 ProSiteProfiles Ubiquitin domain profile. 32 105 IPR000626 GO:0005515
Vvi16g1354 585 SUPERFAMILY Ubiquitin-like 38 107 IPR029071 -
Vvi16g1354 585 Pfam Ubiquitin family 40 106 IPR000626 GO:0005515
Vvi16g1354 585 Pfam Ubiquitin family 112 182 IPR000626 GO:0005515
Vvi16g1354 585 Gene3D - 31 108 - -
Vvi16g1354 585 FunFam Phosphatidylinositol 4-kinase gamma 4 31 110 - -
Vvi16g1354 585 SMART ubq_7 34 105 IPR000626 GO:0005515
Vvi16g1354 585 SMART ubq_7 110 183 IPR000626 GO:0005515
Vvi16g1354 585 SUPERFAMILY Protein kinase-like (PK-like) 425 581 IPR011009 -
Vvi16g1354 585 CDD Ubl_ubiquitin_like 112 181 - -
Vvi16g1354 585 SUPERFAMILY Ubiquitin-like 85 182 IPR029071 -
Vvi16g1354 585 ProSiteProfiles Ubiquitin domain profile. 110 182 IPR000626 GO:0005515
Vvi16g1354 585 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 271 567 IPR000403 -
Vvi16g1354 585 Gene3D - 110 198 - -
Vvi16g1354 585 Pfam Phosphatidylinositol 3- and 4-kinase 280 531 IPR000403 -
Vvi16g1354 585 PRINTS Ubiquitin signature 43 63 IPR019956 -
Vvi16g1354 585 PRINTS Ubiquitin signature 86 107 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1354 Vvi-Chr16 21971524 21974363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1354 1 584 Acyl Lipid Metabolism Gene Families AT5G24240 63.823 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1354 - - vvi:100264030 1179.47