Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1352 ATGGGCTGCTTTTGCTCTAAGAAAGCTAGACAAACACCAGGATACGAGGAGCCTACTGTTCTTGCTGCTGAAACACCTTTTACTGTGTGCGAAGTAGAAGCCTTGTATGAGCTATTTAAGAAATTAAGCAGTTCCATCATAGATGACGGGCTTATCCACAAGGAAGAATTCCAGCTTGCACTCTTCAGGAACAGAAATAAGAGGAATCTCTTTGCAGATAGGATATTTGACCTGTTTGATGTCAAGCGAAATGGGGTTATTGAGTTTGGAGAATTTGTTCGTTCATTGGGTGTGTTTCACCCAAATGCACCTGAAGCAGACAAAATTTCTTTTGCTTTTCGACTGTATGATCTAAGGCACACCGGGTATATTGAGCGAGAGGAGTTGAAGGAGATGGTGCTGGCGCTTCTTCATGAATCAGATCTGATACTTTCAGATGAATATGTTGAACAAATTGTGGATAAGACTTTCAATGATGCAGATTCAAATGGTGATGGAAGGATTGACCCAGAAGAGTGGAAGGAATTTGTATCAAAGAATCCATCCCTGATAAAGAACATGACTCTTCCATACCTAAAGGACATAACATTGGCATTTCCCAGCTTTGTGATAAGCTCTGAAGTTGAAGACTCAGAAATATAG 642 0.4065 MGCFCSKKARQTPGYEEPTVLAAETPFTVCEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNKRNLFADRIFDLFDVKRNGVIEFGEFVRSLGVFHPNAPEADKISFAFRLYDLRHTGYIEREELKEMVLALLHESDLILSDEYVEQIVDKTFNDADSNGDGRIDPEEWKEFVSKNPSLIKNMTLPYLKDITLAFPSFVISSEVEDSEI* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1352 213 PRINTS Recoverin family signature 168 188 - -
Vvi16g1352 213 PRINTS Recoverin family signature 122 140 - -
Vvi16g1352 213 PRINTS Recoverin family signature 75 96 - -
Vvi16g1352 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Vvi16g1352 213 Gene3D - 17 211 - -
Vvi16g1352 213 SUPERFAMILY EF-hand 20 202 IPR011992 -
Vvi16g1352 213 Pfam EF-hand domain pair 108 177 IPR002048 GO:0005509
Vvi16g1352 213 SMART efh_1 152 180 IPR002048 GO:0005509
Vvi16g1352 213 SMART efh_1 108 136 IPR002048 GO:0005509
Vvi16g1352 213 SMART efh_1 71 99 IPR002048 GO:0005509
Vvi16g1352 213 PANTHER CALCINEURIN B 1 211 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vvi16g1352 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Vvi16g1352 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Vvi16g1352 213 CDD EFh 108 178 IPR002048 GO:0005509
Vvi16g1352 213 FunFam calcineurin B-like protein 3 17 210 - -
Vvi16g1352 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1352 Vvi-Chr16 21957186 21959751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1352 25 213 EF-hand Containing Proteins AT5G24270 77.249 7.33e-104 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1352 K06268 - vvi:100246874 428.328