Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1351 ATGGCCGCTGCACTGAGGTCGAAATCGTCTAGAGAAACGGCCTTGTTAACATTCTCTCAGTTCAGATACTTCATCTTGAATCATATGCATGCGGGTCGTTTGCCCAATTCCTATATTTCCCACAAACCCAATTGCGACCATTGCTTTACGCATTCCCACACACCCTACCACTTCACCTCATTCAAACCCGTGTCTCTGCGTGGTGAACTTGTCGATAAGGGTCTTGAGTTCTTCGATAATCAGAGGTTTTCGAAGGTGGGTTTTAGTACGAATGAGAGTAAAAAATTGAGCAGGGATACTATTTTGAATTCTTTTGGGGACCCGCCGGAGGTTTGGTCCGGCGACGGAATTGTGGTCCGGCAGGGGGGATCAGGTTCGAATTTGGTCCGTGGGGGCGGTGGGGCAGGAGCGAACGGGGGAGCAGGTAGTGGGTTCGGTTCCAATTCAAAGGACGAGTCTTGGGGAGGATCAAATTTGGGCCACAATTTCCCAACCCCGAAAGAGATCTGTAGAGGATTGGATAAGTTTGTGATTGGGCAGGAGAGAGCGAAAAAGGTGCTCTCTGTGGCAGTATATAATCATTATAAGCGGATCTATCATCAGTCCCTCCAAAAGTGGCCTGCAGAAGATACAAGTGATGACAAAGCAGAGGCCACGGATAATGATTCAGTGGAACTCGAGAAAAGTAACATTCTTCTAATGGGACCGACTGGCTCAGGGAAGACATTACTTGCCAAAACCTTGGCACGGTTTGTGAATGTTCCCTTTGTTATTGCAGATGCCACTACACTCACTCAGGCAGGATATGTTGGGGAAGATGTGGAATCTATATTATACAAGCTCCTCATGGTTGCTGACTATAATGTAGCAGCTGCCCAGCAGGGCATCGTTTACATTGATGAAGTTGACAAAATCACAAAGAAGGCTGAGAGCCTCAATCTTAGCAGAGATGTATCAGGGGAGGGTGTCCAACAGGCTTTACTAAAAATGCTGGAAGGAACAGTTGTGAACGTCCCAGAAAAGGGAGCTCGAAAGCACCCCAGAGGTGACAACATTCAGATTGACACAAAGGACATTCTCTTCATATGTGGGGGTGCCTTCATTGATCTAGAGAAAACAATCTCTGAAAGACGCCAAGATTCTTCTATTGGGTTTGGTGCACCAGTACGTGCAAACATGAGAACTGGTGGTCCGACAGATGCTGCTGTGGCATCATCATTATTGGAGACTGTTGAAAGCAGTGATCTTATTTCATACGGTTTAATACCTGAATTTGTTGGGCGATTTCCAATCCTTGTTAGTTTGTCTGCTCTCACTGAGAACCAACTTGTTGAGGTCCTAACAGAACCGAAAAATGCTCTGGGGAAGCAGTACAAGAAGATGTTCCAAATGAATGGAGTCAAGCTGCATTTCACAAAAAATGCTCTGAGATTAATTTCTAGAAAGGCAATGTCCAAAAACACGGGTGCTCGAGGCTTAAGGTCCATATTAGAGAATATTTTGATGAATGCGATGTATGAGATCCCAGATGTGAGAACAGGAAATGATATCATTGATGCTGTAGTTGTTGATGATGAGGCTGTTGGCTCTGATGGACACGGATTTGGAGCCAAAATACTTTACGGAAAGGGTGCACTGGACTGCTATCTTTCACAACACAAATTAAAGGAGACAGAAACACCCATGGAGGGCTCTTCTGATGGTGAAGCCGAGGCAGAGGCAGAAATTCCTTCCATTGTCGCCAGCATGTAA 1752 0.4572 MAAALRSKSSRETALLTFSQFRYFILNHMHAGRLPNSYISHKPNCDHCFTHSHTPYHFTSFKPVSLRGELVDKGLEFFDNQRFSKVGFSTNESKKLSRDTILNSFGDPPEVWSGDGIVVRQGGSGSNLVRGGGGAGANGGAGSGFGSNSKDESWGGSNLGHNFPTPKEICRGLDKFVIGQERAKKVLSVAVYNHYKRIYHQSLQKWPAEDTSDDKAEATDNDSVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNLSRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGGPTDAAVASSLLETVESSDLISYGLIPEFVGRFPILVSLSALTENQLVEVLTEPKNALGKQYKKMFQMNGVKLHFTKNALRLISRKAMSKNTGARGLRSILENILMNAMYEIPDVRTGNDIIDAVVVDDEAVGSDGHGFGAKILYGKGALDCYLSQHKLKETETPMEGSSDGEAEAEAEIPSIVASM* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1351 583 MobiDBLite consensus disorder prediction 558 583 - -
Vvi16g1351 583 Pfam C-terminal, D2-small domain, of ClpB protein 438 507 IPR019489 -
Vvi16g1351 583 CDD RecA-like_ClpX 164 435 - -
Vvi16g1351 583 Gene3D - 157 436 IPR027417 -
Vvi16g1351 583 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 161 525 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Vvi16g1351 583 SMART AAA_5 227 389 IPR003593 GO:0016887
Vvi16g1351 583 Pfam AAA domain (Cdc48 subfamily) 227 431 IPR003959 GO:0005524|GO:0016887
Vvi16g1351 583 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 157 436 - -
Vvi16g1351 583 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 51 556 - -
Vvi16g1351 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 521 IPR027417 -
Vvi16g1351 583 SMART ClpB_D2_small_2 438 535 IPR019489 -
Vvi16g1351 583 Gene3D - 437 536 - -
Vvi16g1351 583 MobiDBLite consensus disorder prediction 130 153 - -
Vvi16g1351 583 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 437 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1351 Vvi-Chr16 21939879 21947044 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1351 K03544 - vvi:100264001 1096.26