Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1349 ATGGCTCTCTCCAAAGCCAGCTTCTTCACGCAGCTCAAAACCCTAACCAAACCGCATCTCCACCACCCACCACCACCGCCGTTGCTCTCCCTCCGCCACCTATCCTTCGTCACCCCAGAAGAGGCTGCTGCTGAGCGGCGCCGCAGGAAACGCCGCCTCCGCATCGAACCACCGCTATCCTCACTCCGCCACCAACAAGCCCAACCCCGCCAAAACCCTAACCCTAATCATAACCCTAACGCCCCCAAGCTCCCAGAACCGGTCTCCGCTCTCTCCGGAAACCGCCTCAACCTCCACAACCGTATCCTCGGTCTCATTCGCGTCAACGATCTGGATGAAGCTGCCCTCCTCACTCGCCACTCCATTTACTCCAATTGCCGCCCCACCATTTTCACCGTCAACTCTGTCCTTGCCGCCCTCCTCCGCCAGTCCCGCTATTCCGACCTCCTCTCCCTCCACCGCTTCATCACCCAGGCTGGGGTTGCCGCAAATGTTGTCACCCATAACCTTCTCATCAACGCCTATCTCGATTGCCGCAAAACCGACACCGCCCTAGAACACTACAAACAATTGATCAACGACGCCCCATTCAATCCCTCGCCCACCACCTACCGAATCCTAATCAAAGGGATTGTTGACAATGGCAAGGTTGAGCGGGCTCTGGAGCTCAAGGAGGAAATGTTGGGCAAGGGTTTTGCAGCGGACCCGGTTGTGTACAGTTATTTGATGTTGGGCCATGTGAGGAACTTGAATGCGGATGGGGTTTTTGAATTATATGAAGAATTGAAGGAGAAGTTGGGCGATGTGGATGATGGGGTAGTGGTTGGGAGCTTGATGAAGGGGTATTTCTTGAGGGGCATGGAGAAGGAGGCGATGCAGTGTTATGCAGAGGCAGTTGGAGAGGGTTCTAAGATTAGAATGAGTGCAGTTGCTTTCAATTCGGTGTTGGATGCGTTGAGTAAGAATGGGAAGTTTGATGAAGCAATGTTGCTGTTTGAAAGGATGATGGCAGAGTATAACCCTCCAAGGCGGCTGTCCATGAATCTTGGGAGTTTTAATGTGATGGTGGATGGCTTTTGCACAGCAGGGAGGTTTAAGGATGCTATTGAGGTCTTCAGGAAGATGGGTGAGAAGAGATGTAGCGCAGACACGTTATCATACAATAATTTGATTGAACAATTATGTAACAATGGGATGTTGGCAGAGGCCGAGGAACTTTATGGAGAAATGGCAAATAAAGGAGTGAACCCAGATGAGTTTACTTATGTGTTGTTGATGGATACTTGCTTTAAGGAGAATAGGACAGATGATGGAGCTGGGTATTTTAGAAAAATGGTTGAAACTGGGTTGAGACCAAACCTGGCAGTTTATAGTAAGTTGGTTGATGGGTTGGTTAAAGTGGGCAAAATTGATGAGGCAAAATCTTTTTATGATTTGATGGTGAAAAAGCTTAAGATGGATGAAGCGAGCTATAAGTTTCTGATGAAGGCATTGTTTGAGGTTGGGAAGCATGATGATGTACTTAAAATGATTGGAGATATGCTGGATGATGATGCTTCTGAGTTTACTACAGATTTGCAAGAATTTGTTAAGGAAGAATTGAGGAAGGAAGGTAGGGAGGAGGATGTGGTGAAGCTTATGGAGGATAAGGAAAGGGAGAAGGCTGAAGCTCAAGCTAAGGAGGCTGCAGCTACAGAGGCAGCCAAGGCCAGTGCCAAGGCTGCTGTTTCTTCTTTATTGCCATCTAAATTATTTGGGTCTAAAGACACCGAGAATGAGCCTGATGTTGTCATTGGAAATACTGTTGAGGCTATTTCTGTGAATGAAGAAGTGGAGGATGTGGAACAAGAAAGCATTGGTGATTCTCCTGCAGAGTCTGGTTCAGAAGAAGCAACTAAAGCCCATAATTCAGCTGATTTAGATGTTAAGAGCGATGACAGGGCTGAGCAGGTAACAGTTTAA 1962 0.4811 MALSKASFFTQLKTLTKPHLHHPPPPPLLSLRHLSFVTPEEAAAERRRRKRRLRIEPPLSSLRHQQAQPRQNPNPNHNPNAPKLPEPVSALSGNRLNLHNRILGLIRVNDLDEAALLTRHSIYSNCRPTIFTVNSVLAALLRQSRYSDLLSLHRFITQAGVAANVVTHNLLINAYLDCRKTDTALEHYKQLINDAPFNPSPTTYRILIKGIVDNGKVERALELKEEMLGKGFAADPVVYSYLMLGHVRNLNADGVFELYEELKEKLGDVDDGVVVGSLMKGYFLRGMEKEAMQCYAEAVGEGSKIRMSAVAFNSVLDALSKNGKFDEAMLLFERMMAEYNPPRRLSMNLGSFNVMVDGFCTAGRFKDAIEVFRKMGEKRCSADTLSYNNLIEQLCNNGMLAEAEELYGEMANKGVNPDEFTYVLLMDTCFKENRTDDGAGYFRKMVETGLRPNLAVYSKLVDGLVKVGKIDEAKSFYDLMVKKLKMDEASYKFLMKALFEVGKHDDVLKMIGDMLDDDASEFTTDLQEFVKEELRKEGREEDVVKLMEDKEREKAEAQAKEAAATEAAKASAKAAVSSLLPSKLFGSKDTENEPDVVIGNTVEAISVNEEVEDVEQESIGDSPAESGSEEATKAHNSADLDVKSDDRAEQVTV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1349 653 MobiDBLite consensus disorder prediction 632 653 - -
Vvi16g1349 653 MobiDBLite consensus disorder prediction 40 90 - -
Vvi16g1349 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Vvi16g1349 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Vvi16g1349 653 Gene3D Tetratricopeptide repeat domain 95 275 IPR011990 GO:0005515
Vvi16g1349 653 Gene3D Tetratricopeptide repeat domain 276 444 IPR011990 GO:0005515
Vvi16g1349 653 Coils Coil 540 567 - -
Vvi16g1349 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 483 IPR002885 -
Vvi16g1349 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Vvi16g1349 653 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 17 592 - -
Vvi16g1349 653 FunFam Pentatricopeptide repeat-containing protein 95 275 - -
Vvi16g1349 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Vvi16g1349 653 Pfam PPR repeat 203 232 IPR002885 -
Vvi16g1349 653 Pfam PPR repeat 456 483 IPR002885 -
Vvi16g1349 653 Pfam PPR repeat 237 265 IPR002885 -
Vvi16g1349 653 Pfam PPR repeat 166 192 IPR002885 -
Vvi16g1349 653 Pfam PPR repeat 310 336 IPR002885 -
Vvi16g1349 653 Pfam PPR repeat family 383 430 IPR002885 -
Vvi16g1349 653 MobiDBLite consensus disorder prediction 584 653 - -
Vvi16g1349 653 Gene3D Tetratricopeptide repeat domain 445 517 IPR011990 GO:0005515
Vvi16g1349 653 NCBIfam pentatricopeptide repeat 310 337 IPR002885 -
Vvi16g1349 653 NCBIfam pentatricopeptide repeat 351 383 IPR002885 -
Vvi16g1349 653 NCBIfam pentatricopeptide repeat 203 235 IPR002885 -
Vvi16g1349 653 NCBIfam pentatricopeptide repeat 386 419 IPR002885 -
Vvi16g1349 653 NCBIfam pentatricopeptide repeat 420 453 IPR002885 -
Vvi16g1349 653 NCBIfam pentatricopeptide repeat 456 483 IPR002885 -
Vvi16g1349 653 SUPERFAMILY TPR-like 168 508 IPR011990 GO:0005515
Vvi16g1349 653 Pfam PPR repeat 345 375 IPR002885 -
Vvi16g1349 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1349 Vvi-Chr16 21928265 21930226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1349 204 549 Miscellaneous Gene Families AT4G11690 26.496 3.76e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1349 - - vvi:100241722 1136.71