Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1346 ATGCAGCCCTTTTTTGGAATGTTTGGATATGGAGGTCCTATTGCATCCATGCATCTTGGGAGGTGTGCTTTAGTTTCTTCCAAGACAAAGGAGTCCAAGAAAGTATATACTTTACATCTTGAGAGGGAGGCTCTTCTCAGCAGTTCTGGTTCTGACCTCACCTGGAGGACTTCTGGAGGCATCAGGAATCCATCAGAAGAAGAAACCGAGAAATCACCTCATGGAAGCTTTACAAAGGTTGAGATTTTCAAGCCAAAAATTGAAAGGTTGAACGTATTTCAACTTCAACGCAAGCTGAAGGACATCTATTTTCCATATATTCAGTGTGATGAAGTGTGTGACACAGGAAAGACTAACACACCGGTTGAGTTTCAGGTCAATGGGTTAGATTTAGCCGAAATTGATGGTGGGGAAGTTGGAACTACAAACTTGCATTCTTCCAATGGCCCTGAGTTTGTTCTGCAGCTTCGTTTTTATGGTAACCAAGACAATGTTGCAACCAAAAGCCCTGGTTTAAGATCGTCTCAAGAAGCTAATGCACGCCTAAAGTGTGTTTATTTTCCCATTGTCGAGGGTAAAGAGAATCTTGAAACGATTTTGGAAAAACTAGAAGCTGAAGGATGTGGGACTAATGAAAATTATGATACATTTAGTCGTGTATCTATTCGGAGACTCGGTCGTTTACTTCCAGACGCTCGTTGGTCACTACTTCCTTTCATGGAACATAAGCTGAAAAAGGGAGACAAAGGCCAATTGTTGAAGAGATGTTGCCGGAGAGTAAAATGTTTTATTGATACTGATGCTGGTTTTAACCCTACACCTTCTAAGACGGATTTAGCACACCATAATCCTTTTACCAAGGCTCTAAAGGACTTTGGTAATAAGCCACCTGAGAAAGGGAGAGAGATAAATGTTGAAATCCTTAGAGATGGAAAGTCATTAACTCTCTTGCAACTGGAAAAGGAGTATCTAGATTGGATTTCCCAGATGCATGATCTTTATGATGAAGAAATTGACTCTGGTGAGGACCAACCTGTCATTGTCGTTGGCTCTTTGAACAAAAAACAGCTTGGTATTTCTTCTGATGTAGTAAGGGTCCATGAGATTATAAGAAGAAAAGGAAAATCTTGGAAACGTGGCCAGAAAATTAAGGTTCTTAAGGGAGCATGTCCAGGGTGTCACAAGAGCAATGTCTTTGCGACATTGGAATATATTCTGCTAGAAGGTTTTCAAGGAGATGCTGGTGGAGAAGCTCGGCTAATATGCAGGCCCTTGAGTCTTCCAGATGAGGATGGTTGTATCCTTGCAGTGGACGATGGGGCTGCTAGTTTTGACTGCCGTGGCTCTCTATCTTTACCCATTAGTGTGATTGATTCTGGAAAGTGCCTTGCCGTTGAAAGTTCTGAATGGCTTTTCCAACTTGAGAAACAACGTCAGAAAGCTCCTTCGACAATTGACATTCTGAGTGAGAGACATTGTCTGGAGTTGGAGGTTGATGGGGCATTACCTGTTGATGCTCCGGTTCATGCTGGACAAGTTCCGCCTAAGGAAATTGTTGCTGTTGTTCGTCCTGCCAGTTTTGTTTCTTCTAGTGCCTCAAAGAACTTGGACCAAAAATATATTATCAAGGATAATTTTGCCTCAAAGAACTTGGACCAAAAGTATATTATCAAGGATAATTTGGAGTTATCTATGGAAGTGAAATTGATGGATGGCACTAAGGATACCAAACATATTTATTCAAAATGTGTGACACCTTCATCCCGTAATGGGTTTCATGGTTTATATATCTTCCCACTAGGATGCAAGTTCCCACAGTTATTTCAAAAAGCTGGTGTTTACACATTTACAGTATTCCTTAAAGGCTCAAGTTTTAAGAGTTGTGAAAAAAGAGTGCTAGTTAAGGCATTGCCTAAGGTTTCGAGTTGGAGATTTTCAAGTGATATACAGAATACTGTGTACAGTGTAAGGGCTGGTTCGTGCTTACCACCATTTTCTATTGCTTGTTATGACTCATATGAAAATCAGATTCCATTCACATCCATACCAGAATTTATCATCAAAAGTAACTGGAATGGAGGGGTACTTGCAGATTTTGATAAAATGAAGTTGGAACTTTCATCCGATAATTTGACTCTTAAAGTTAAGGATGTACTAATTGAAAGCAGTGACTTGGACAAGATTCGACCGAGTTATGCAACTACATTGGTGCTATGTCCACGTGATGAGTTGCCCTCAATTTCTGTTGCATGTGAAGTTAATCCTGGACCTTTAGAACGTGCCATAGCCCAGCCACCAGTATCAGACAACCAGTTGCTTCCTGGATGTGTGATTGAGGAGCTTGTATTAGAGATGTTTGATGCATATGGTAATCATGCCAGAGAAGGGTTGGAAGTTCAGTTTAATGTGGATGGATTTTGTTTCCAAGATCATAATGGTTTAAAGCGTAAGGTGGATGATCGTGGATGCATTGACCTTAGTGGCCTCTTGAGAGTCACAACAGGGTATGGAAAAAATGTTTCCCTATCAGTTTTATCTGGTAACAAAGTAGTTTTCAAGCAAGAGTTGCAAACAGAGAAAAGAGAGCTAAGAGCTGCATCAATAGTACCTCAGTCTTGTGCTGCTGGGTCACAACTCGAAAATATTGTCTTCGAAATCATCAACTCTAAGGGTGAAGTTGATGAAACTGTTCATGAGGAAGAGAAACATGGACAATTCCATACGCTTACAATAATGTCTGATTCATTTTATTTGGATGGTTCTGTAAGATTCGCTTTCAGGAATGGACGCTGCATTATTCCTACTATTCCTCTCCCCCGAAAGCAAGGGGACTTCACCTTTCTAGCTGCTCACTCCTGTCATCCAGAGCTATCTTTGGCTGTCAAGGTTTCTGTTGTGGAAGTCCTAAAAGTGAAGCAGGAAGATGTCCAACTTCAATATCCAAATGAAAACATGTTGCTCCTCCAGGATTCACCTGCTCCAAGGCATGTAGAGAACAGCCTAGTGGAGTCACTCATGAATGACGAGAAGGAAATTGAGGATGACATTTGCAAAATTGGTTTGTTTATTGGAGATAATGAAAGGAAACTGGAATTGCTTCATAAACAGAAGGGAGATATTGAGCAATCCATTGAGAAATTGCAAGCTTCTGTAGAATATGATTCATTCAACAACCATCGGGGCTACTTGTCTAAGAAAGAATCAGTGATGAGATGCATTGAAAAAAAGGATAAATCCGCAGCTGCTTTTTTCTGCAATCTTTCAAGAGAGATTCCATTCCAAGATCCAGTATCTCAGCTTATGAAAGATATAGTTGGTGTGGTTGCACTTCTTGCAACTGTTCGTATCAATCGGCTTGGCAGGATGTTGGCTGAATATTTGGGTGAAGATCAAATGCTTGCAGTTGTGTGTAGATCCTATGAAGCTGCAAGTAAGCTTGAGAAGTATGAATGGGATGGAAAAGTAGACCGTGAACATGCTCTTTATGCAGTAGCAAAAACATTTGGAAAACCGATAAATGACCGGTTTCTTGTTATTTGCCTCGAGAATATAAGGCCTTACATAGGAGGGTTTCAGGACAATGATCCTCAGAGGAAGCTGAACATTCCAAATCCTATTTTACCCACTGGGGAGATGCCTCCAGGGTTCTTGGGGTATGCAGTTAACATGGTTGACCTAGAGTCCCATCATTTACTTACAAGGACCACTGCAGGGCATGGTCTTCGGGAGACATTGTTCTATTGTCTATTTGGTGAGCTGCAGGTTTATCAAACCAGGGAAGACATGAAGAAGGCTTGCTTCTATGCAAGACATGGTGCTGTTTCTCTTGATGGTGGGATTATGAAAGGAAATGGAGTCATTTCTTTTGGATGTAGGGAACCGCAAATATGGTTTCCAGTTGCTAACCTGGAATCACCAAAAAATGTTAGAATCCTGGAAGTGATAGAGGAAAAGAGAACTTCTTTGAGGCTGGTCCACAATGAAATAGGCAAACTGACAAAAATCATTAACAAAGCTCAGAAGAAGTTACAGAAGAAAATTTCACGGTGTCGCAAGCTCATGGATCGCTTAGAACCCTGTATGAAAGGCCACTACCTGGAGTACAATACGAATACAATAAACAGCCTGGAAAACTCGCCAAAATGA 4146 0.4096 MQPFFGMFGYGGPIASMHLGRCALVSSKTKESKKVYTLHLEREALLSSSGSDLTWRTSGGIRNPSEEETEKSPHGSFTKVEIFKPKIERLNVFQLQRKLKDIYFPYIQCDEVCDTGKTNTPVEFQVNGLDLAEIDGGEVGTTNLHSSNGPEFVLQLRFYGNQDNVATKSPGLRSSQEANARLKCVYFPIVEGKENLETILEKLEAEGCGTNENYDTFSRVSIRRLGRLLPDARWSLLPFMEHKLKKGDKGQLLKRCCRRVKCFIDTDAGFNPTPSKTDLAHHNPFTKALKDFGNKPPEKGREINVEILRDGKSLTLLQLEKEYLDWISQMHDLYDEEIDSGEDQPVIVVGSLNKKQLGISSDVVRVHEIIRRKGKSWKRGQKIKVLKGACPGCHKSNVFATLEYILLEGFQGDAGGEARLICRPLSLPDEDGCILAVDDGAASFDCRGSLSLPISVIDSGKCLAVESSEWLFQLEKQRQKAPSTIDILSERHCLELEVDGALPVDAPVHAGQVPPKEIVAVVRPASFVSSSASKNLDQKYIIKDNFASKNLDQKYIIKDNLELSMEVKLMDGTKDTKHIYSKCVTPSSRNGFHGLYIFPLGCKFPQLFQKAGVYTFTVFLKGSSFKSCEKRVLVKALPKVSSWRFSSDIQNTVYSVRAGSCLPPFSIACYDSYENQIPFTSIPEFIIKSNWNGGVLADFDKMKLELSSDNLTLKVKDVLIESSDLDKIRPSYATTLVLCPRDELPSISVACEVNPGPLERAIAQPPVSDNQLLPGCVIEELVLEMFDAYGNHAREGLEVQFNVDGFCFQDHNGLKRKVDDRGCIDLSGLLRVTTGYGKNVSLSVLSGNKVVFKQELQTEKRELRAASIVPQSCAAGSQLENIVFEIINSKGEVDETVHEEEKHGQFHTLTIMSDSFYLDGSVRFAFRNGRCIIPTIPLPRKQGDFTFLAAHSCHPELSLAVKVSVVEVLKVKQEDVQLQYPNENMLLLQDSPAPRHVENSLVESLMNDEKEIEDDICKIGLFIGDNERKLELLHKQKGDIEQSIEKLQASVEYDSFNNHRGYLSKKESVMRCIEKKDKSAAAFFCNLSREIPFQDPVSQLMKDIVGVVALLATVRINRLGRMLAEYLGEDQMLAVVCRSYEAASKLEKYEWDGKVDREHALYAVAKTFGKPINDRFLVICLENIRPYIGGFQDNDPQRKLNIPNPILPTGEMPPGFLGYAVNMVDLESHHLLTRTTAGHGLRETLFYCLFGELQVYQTREDMKKACFYARHGAVSLDGGIMKGNGVISFGCREPQIWFPVANLESPKNVRILEVIEEKRTSLRLVHNEIGKLTKIINKAQKKLQKKISRCRKLMDRLEPCMKGHYLEYNTNTINSLENSPK* 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1346 1381 Coils Coil 1030 1050 - -
Vvi16g1346 1381 MobiDBLite consensus disorder prediction 51 75 - -
Vvi16g1346 1381 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 17 1372 - -
Vvi16g1346 1381 Coils Coil 1336 1356 - -
Vvi16g1346 1381 SUPERFAMILY Smc hinge domain 1098 1293 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1346 Vvi-Chr16 21878909 21906260 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1346 K23113 - vvi:100252197 2754.55