Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1342 ATGGAGTCCCTGCAATCTCCTCTTGTTCTCTCGTCCAAACTTCTTCCAAATTCATTAAAAAAGCCAGTTTTAGAAGTGGGGTTTGCTTGCTTTTTCAAACAAAGAAGAGTCATCCAATCTGTTTCAATCAAAAGATCAGTTGTGTGCTGTAGCAGAAAAGGAGGAGGTGGTGGTTCTCAAGATGGGTCTTCTGCCATGCTAGTGAATACTGATAAGAAGGATGCCTCGGACTCTGTTGGGTTCCACTTGGTTCCTCCTCCATCCGGTGATAATGGAGTCATTGACCCTCATGAGAAGTTATCTACTCAAAAAGAAGCAGAAACTGGAAACAGTGAAGGTGAGGAGGAAAGAAAAACCAAAGTGACCTACAATATTGTTTTTGTTACCTCTGAATCAGCACCATATTCAAAGACTGGAGGTCTAGGAGATGTCTGTGGTTCTTTGCCTATAGCTCTAGCTGCTCATGGGCATCGTGTAATGGTTGTATCACCTAGATACCAAAATGGTACTTGTTCAGATGAAATTTTTTCAGGTGCTTCAGATCTTGAGCACCCCATCAAGGTCCATTGCTTTGGAGGGGTGCAGGAAGTCTCCTTCTTCCATGAGTACAGAGCAGGTGTAGACTGGGTATTTGTGGACCACCCTTCATATCATAGACCAGGAAATCCATATGGTGATGGTTATGGCGCTTTTGGTGATAATCAGTTTCGGTTCACTTTACTTTGCCATGCAGCATGTGAGGCTCCATTGGTGCTTCCATTGGGAGGGTTTACCTATGGGGAAAAATGTTTGTTTCTTGTTAATGATTGGCATGCAAGCCTAGTGCCAGTGCTTTTGGCTGCCAAGTATCGTCCACATGGAGTTTATAAAGATGCACGAACTGTTCTTGTAATACACAACCTTGCACATCAGGGGGTGGAACCTGCAGTAACTTATGATAATTTGGGGCTGCCTCCTGAGTGGTATGGGGCTGTGGAATGGGTGTTTCCCACATGGGCAAGGACGCATGCTCTTGACACGGGCCAAGCTGTCAATCTTCTGAAGGGTGCTATTGTGACAGTTGATCGGATACTGACAGTTAGCAAGGGCTATGCTTGGGAAGTAACAACTCCCGAAGGTGGATATGGTCTGCATGAGCTCCTGACCAGTCGAAAAGCTGTTATAAATGGGATCACAAATGGTATTGATGTTTCCGAATGGGATCCATCCTCAGATGAGCATATTCCTTTCCATTACTCTGCTGAAGATCTCTCTGGGAAGGTTCAATGCAAGATTGCTTTGCAGAAGGAATTAAGCCTGCCCATTAGGCCGGATTGTCCATTGATTGGATTCATTGGGAGATTGGACTACCAGAAAGGAATCGATGTGATTCGGTTGGCAACTCCAGAGCTTATGGGAGAGGACGTCCAATTGGTCATGCTTGGGTCTGGGAACCCAGAGGACGAAGAGTGGATGAGAGTGATGGAATCAACATACAGGGACAAGTTCCGCGGTTGGGTTGGATTTAATGTCCCAATTTCTCATAGAATAACTGCAAGCTGTGACATCCTGTTGATGCCATCAAGATTCGAACCTTGTGGACTAAACCAGCTCTATGCAATGAGATATGGGGCTGTACCAGTTGTACATGGCACTGGAGGACTCAGAGATACAGTAGAGAATTTCAATCCATATGCTGGAGGAGGCAGCGGTGAAGGAACCGGGTGGACGTTTTCTCCCCTGTCAAAAGACACTATGCTGGCGGCACTGAGAGTTGCTATCAGGACATACCGGGAACACAAGCCCTCCTGGGAGAGGTTGATGAAGAGAGGAATGGAGAAAGATTATACATGGGATAAAGCTGCACTTGAATACGAGCAGGTCTTCAAATGGGCCTTCATCGATCCGCCTTACGTTAGCTAG 1902 0.4595 MESLQSPLVLSSKLLPNSLKKPVLEVGFACFFKQRRVIQSVSIKRSVVCCSRKGGGGGSQDGSSAMLVNTDKKDASDSVGFHLVPPPSGDNGVIDPHEKLSTQKEAETGNSEGEEERKTKVTYNIVFVTSESAPYSKTGGLGDVCGSLPIALAAHGHRVMVVSPRYQNGTCSDEIFSGASDLEHPIKVHCFGGVQEVSFFHEYRAGVDWVFVDHPSYHRPGNPYGDGYGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVPVLLAAKYRPHGVYKDARTVLVIHNLAHQGVEPAVTYDNLGLPPEWYGAVEWVFPTWARTHALDTGQAVNLLKGAIVTVDRILTVSKGYAWEVTTPEGGYGLHELLTSRKAVINGITNGIDVSEWDPSSDEHIPFHYSAEDLSGKVQCKIALQKELSLPIRPDCPLIGFIGRLDYQKGIDVIRLATPELMGEDVQLVMLGSGNPEDEEWMRVMESTYRDKFRGWVGFNVPISHRITASCDILLMPSRFEPCGLNQLYAMRYGAVPVVHGTGGLRDTVENFNPYAGGGSGEGTGWTFSPLSKDTMLAALRVAIRTYREHKPSWERLMKRGMEKDYTWDKAALEYEQVFKWAFIDPPYVS* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1342 633 CDD GT5_Glycogen_synthase_DULL1-like 124 624 - -
Vvi16g1342 633 Gene3D Glycogen Phosphorylase B; 397 608 - -
Vvi16g1342 633 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 101 631 - -
Vvi16g1342 633 Pfam Starch synthase catalytic domain 124 382 IPR013534 -
Vvi16g1342 633 NCBIfam glycogen/starch synthase, ADP-glucose type 124 623 IPR011835 GO:0004373
Vvi16g1342 633 Pfam Glycosyl transferases group 1 435 587 IPR001296 GO:0016757
Vvi16g1342 633 Gene3D Glycogen Phosphorylase B; 143 622 - -
Vvi16g1342 633 Hamap Glycogen synthase [glgA]. 123 625 IPR011835 GO:0004373
Vvi16g1342 633 FunFam Starch synthase, chloroplastic/amyloplastic 124 408 - -
Vvi16g1342 633 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 122 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1342 Vvi-Chr16 21844987 21851407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1342 98 622 Glycosyltransferase AT3G01180 48.881 4.09e-165 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1342 K00703 - vvi:100250417 1263.44