Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1339 ATGGATGAAAAGGAGGTCTCGAGCTCACACTTGATCTCTGAAGGCAAAAGTAATAATGTTTATCCGATCTATTTTGGTATTTCTTGTGCATTCTCTGCCCTCAGGCTGATTTCAGGGCCTGACGAGGATGATGAAAAATGGTCCAAGATACGGGATAGAATGCTTCAAGGAACCGCTCAACTCTTGGGATTGCTGGTATGGAATGTTCAAAGAGAAGGAAACAATGTGGGGAAGTCTGAGCTTCTCCATATGCTTCAGGTTGCTGAGAAAGAAGTTGAAGAGTTGAAGAAACTGAGACGTGAAGATGCAAAAGCCAATGAGAAAGTTGTGAGCATCTATGCTGCACAAGAACAGACCTGGTTCAGCGAAAGGAAGAGGCTTCGGCAGCAAATTGGAGCTCTTTTTAATGAATTCAGGGTTCTTCAGACAAAGAAGGATGGAGCTCTCTCGGAATTGAATGAAAAAATAAAGGAGTTAGAGCTTTTGATACAGTCTAAGGATAAGGTATTGGAGGAAGAAGAGCGAAAGAAGAAAGAGTTAGAAGAACAGCTAAAGAAGGCTGAAGATGCAGCAGAGGAATTGAGAGTAGCTGCAAAACATGCAGCTCAAGAGCATTCTTCTGAGCTTTGGAAGCACAAAACTACCTTTCTTGAGCTTGTTTCAAACCAGAGGCAGCTTGAAGCAGAGATGGGTCGAGCCCTGAGGCAAGTAGAAGCAGGAAAACAAGAGCTTGATTCAGTCTTGGAGCAAAAGGAGGAATCGGTCTTGATGGTCCAAAAGCTATCCATGGAGATTGTAAAGATGCGAAAAGACTCTGAACAGAAAGACAAAATTTTGTCTGCTATGCTGAGGAAATCCAAATTGGATACATCAGAAAAGCAGATGCTTTTAAAAGAGGTTAAATTATCGAAGGCAAAGAGAAAGCAAGCTGAGCTAGAGACAGAAAGGTGGCGGGCAGCTTCTGAGTCTAGACATGAGAGGCATTCATTGAAAAGCTTTTTGTCTAACCAAATTTATGGTGCAAAAGGGGCGAATCCTAATGCAACCGCATCATCACAGATTGGAAGGACCAGATCACAGCCAGCTGATCTTCTTCTTGAGTATGTGCAACCTGAGCTTAGAGACGAGTCAGAAAACCTCTCTCTCCTTTCTGAACAATACCCTTCAGAAGAAAATGAAGAACTAGTGATAGCAACTGATGTTAAGCAGTTGGAAGGTTGGGTGCGCTCAGAAGCAGAAAAGTATGCAACTCTAATTGAGCAGAGGCATCACCTGGAAATAGATGCTTTTGCAGAACAAATGAGACTCAAAGATGAGAAGTTAGAAGCTTTTCGGTGGCGGTTGATGAGCATGGAGCTAGAATCAAAGAGGCTGCAGTCACATGTTGAGGGGCTGAACCAGGATATGTCACAGCTCCGACAAAAGAATGTGAAACTTGAAGCCTTGTTAATGAGCCGGGAAGCAGAATTAACTTCCTTGAAAGAGCAGTTGACATTGCATTTAAACCCCTTAATTTTCCCAAAGACCAACTTCAATTCATCTCCACCTGATCCAGCTTTAGCCCATGATACCATTTGGTCCAAAGTTAAGATCATAAAGGGAAAATTGGGGGAGGAAGAGCAAGAAATAAAGACGAGTACAGTGGAAATTTCTGAAGAGGTGGAGCATGAGAAAGAAGAGGATAGTCCATTTGTAAAACAGTCTAGAGAAACAATTTTGACAGTCCAATCCCCAGAAAAAGAGTTTGAAGAAGAAAAGGTTGTGCCCCTCTGCCCAAGTTCCATTCAACATCAACATGCGAGCAGCCCAGAGAAGGTTGATATTGTTGAAAAGTTAGCACCAGTGGGTCAGTCCTTGAGTAAGAAAAATAATACTCCATGGAAGATGGATCTTCATGCTCTTGGAGTCTCTTACAAGATCAAGAGGCTGAAACAGCAGCTTGTCATGCTTGAGAGGTTGACTGGAAAGCAAGAAAGTGGTGAAGATAGGGAAAGTGATGAGAAAGGGCAGTTGGGAATAAAGGGTTTTCTTTTGTTAATGTTTTTACTGAATAAACAAGTTAGCAGGTACCAGTCCCTCCAAGAGAAGATAGACGATCTTTGCAAACGAATGCATGAGAGTGATGTAGATACAGGCCGAGGAGATTCCAGTAGTTCAAGAGCAAGGGAGGAAACTAAAGCACTTGAACACTTTCTTGAGGACACATTTCAGCTGCAGAGATACATGGTTTCAACAGGGCAGAAATTGATGGAAATGCAATCCAAGATTGCTTCTGGATTCCTTGGAGTTGCTGAAGATCTGGATGGGTCTGCCAATTTTGACATGAAGCGGTTTGCTGATAATATTAGAACTCTCTTTAGGGAAGTTCAAAGAGGTCTTGAAGTTCGAATCGCTCGAATTATTGGAGACCTTGAGGGAACCCTGGCATGTGAGGGGATCATTCATTTAAGGAGGTAG 2457 0.4265 MDEKEVSSSHLISEGKSNNVYPIYFGISCAFSALRLISGPDEDDEKWSKIRDRMLQGTAQLLGLLVWNVQREGNNVGKSELLHMLQVAEKEVEELKKLRREDAKANEKVVSIYAAQEQTWFSERKRLRQQIGALFNEFRVLQTKKDGALSELNEKIKELELLIQSKDKVLEEEERKKKELEEQLKKAEDAAEELRVAAKHAAQEHSSELWKHKTTFLELVSNQRQLEAEMGRALRQVEAGKQELDSVLEQKEESVLMVQKLSMEIVKMRKDSEQKDKILSAMLRKSKLDTSEKQMLLKEVKLSKAKRKQAELETERWRAASESRHERHSLKSFLSNQIYGAKGANPNATASSQIGRTRSQPADLLLEYVQPELRDESENLSLLSEQYPSEENEELVIATDVKQLEGWVRSEAEKYATLIEQRHHLEIDAFAEQMRLKDEKLEAFRWRLMSMELESKRLQSHVEGLNQDMSQLRQKNVKLEALLMSREAELTSLKEQLTLHLNPLIFPKTNFNSSPPDPALAHDTIWSKVKIIKGKLGEEEQEIKTSTVEISEEVEHEKEEDSPFVKQSRETILTVQSPEKEFEEEKVVPLCPSSIQHQHASSPEKVDIVEKLAPVGQSLSKKNNTPWKMDLHALGVSYKIKRLKQQLVMLERLTGKQESGEDRESDEKGQLGIKGFLLLMFLLNKQVSRYQSLQEKIDDLCKRMHESDVDTGRGDSSSSRAREETKALEHFLEDTFQLQRYMVSTGQKLMEMQSKIASGFLGVAEDLDGSANFDMKRFADNIRTLFREVQRGLEVRIARIIGDLEGTLACEGIIHLRR* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1339 818 Coils Coil 448 496 - -
Vvi16g1339 818 Coils Coil 293 313 - -
Vvi16g1339 818 Coils Coil 683 703 - -
Vvi16g1339 818 Coils Coil 149 204 - -
Vvi16g1339 818 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Vvi16g1339 818 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 7 818 - -
Vvi16g1339 818 Coils Coil 78 108 - -
Vvi16g1339 818 Coils Coil 223 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1339 Vvi-Chr16 21827843 21830799 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1339 - - vvi:100255603 1499.18