Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1332 ATGGCTGCTTCCCTTCTTCTCCCCTCTCAGAGGATCAGCCAAATGCGCATGCATTCAGAAGATTTGACAAAAGATGTCATGTGCTTCTCTCTTTGTCTCAAACGCCAGAAATGCAACATCAAGCTATACATGATTCCTGCTAGCACTATTGTTCATCATGGTGTTTTGAGACCTTTTGCGACAATTGGCTCTTCAGGAGCAGATGGGATTAACCAAGGAAATCATGTTTCTTTGGGTGTTTTTGCACCAAACAAATTTCAAAGGTCTAGAACATTGCTTCATAGCTCTTCAAGTCCCTCGGGTGATGAGAATGATTTTGAAAGACAGTTGCAGGAGTTGTTTAATGCAGTCAAAACTATGATTAAGATGGGGAACAAAAAGGATGCCATAGACCTACTTCAAGCAAATTACGAAGCTGTGAAAGAACAGATAGATGTGGGTGCCAAGGGAATGGAACAAGCTGCTATTCTTGACATCATAGTCTTGGGTTACATGCTTGTTGGGGACTTAAAGTTGGTTAGATCCCTGTTGGATATGATGGACAAAATCGTTGATGGTTTAAAGGATGATGAAGCACTTCTAGATTCGGTACTCTTGCATATGGGAAGTGTGTACTCAACTTTGGGGAAGTTTGAGAAATCCATGCTCATGTACCGGAGGGCTCTTGAAATTCTAGAGATGACATATGGAAAAGATAGTGCATTTCTTATCACACCATTGCTAGGGATGGCAAAAGCTCTTGGCTCCATTGGAAGAGTAACAAAAGCAGTAGAAATCTACCATCAGGCTATTGCTATTTTGGAATTAAGCAGAGGTGCTGAAAGTGAGGATCTGGTGGTGCCTTTACTTGGTCTGGGCAATCTTTTAATCAAGGAGAGAAAGGCCACAGATGCAGAAATTCCTTTTACTAGAATTTTGAACATATATAAGAGGTCATATGGAGAAAACGATGGAAGAGTTGGAATCGCTATGTGTTCTCTTGCCCATGTGAAATGTGCAAAAGGAGATGCAGATGAAGCCATTCAATTATATAGAAATGCCCTTCAGATCGTCAAGGTTTCAAAATATATGGCTTTAGATGACAACATCATGGAGAAAATGAGGATAGATTTGGCAGAACTACTGCATGTAGTAGGAAGAGGAAAAGAAGGTCGGGAGCTACTGGAGGAGTGCTTGTTGATCACTGAGAAGTATAAAGGAGAAGACCATCCCAGTTCCGTTACTCATCTTATAAACCTCGCAACCTCCTATTCACGCTCAAAGAATTTTGTGGAGGCTGAGCGCTTGCTGAGAACAAGTTTGAGGATCATGATGAAAACCATGGGGCCTGACGACCAGTCCATCACCTTCCCGATGTTGCATCTTGCAGTTACTCTCTACCATTTGAAACGGGATGAAGAGGCTGAACAGCTTACCCTGAAGGCCTTGCAGATCCGTGAGGCAGCATTTGGAAAAGAATCTCTTCCCGTTGGGGAAGCTCTAGACTGTTTGGTGTCCATTCAGACCCGAGTAGGGAAAGATGATAGCGAGCTACTGGACCTGCTCAAGCGGGTTCTGATAATTCAAGAAAAGGAGTTCGGCTATGAAAGTGAAGAGGTAATGATAACTCTTAAAAAAATTGTATTTTACTTGGACAAAATGGGGAGAAAGGATGAGAAATTTCCTCTGCAGAAAAGATTGTCTCTGCTGAGAAACAAACACAAGGAATCAATACAGTATTAA 1722 0.4199 MAASLLLPSQRISQMRMHSEDLTKDVMCFSLCLKRQKCNIKLYMIPASTIVHHGVLRPFATIGSSGADGINQGNHVSLGVFAPNKFQRSRTLLHSSSSPSGDENDFERQLQELFNAVKTMIKMGNKKDAIDLLQANYEAVKEQIDVGAKGMEQAAILDIIVLGYMLVGDLKLVRSLLDMMDKIVDGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLITPLLGMAKALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDAEIPFTRILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMALDDNIMEKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYSRSKNFVEAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKRDEEAEQLTLKALQIREAAFGKESLPVGEALDCLVSIQTRVGKDDSELLDLLKRVLIIQEKEFGYESEEVMITLKKIVFYLDKMGRKDEKFPLQKRLSLLRNKHKESIQY* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1332 573 Pfam Tetratricopeptide repeat 283 351 - -
Vvi16g1332 573 Pfam Tetratricopeptide repeat 197 268 - -
Vvi16g1332 573 Pfam Tetratricopeptide repeat 367 437 - -
Vvi16g1332 573 Coils Coil 123 143 - -
Vvi16g1332 573 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Vvi16g1332 573 SMART tpr_5 407 440 IPR019734 GO:0005515
Vvi16g1332 573 SMART tpr_5 279 312 IPR019734 GO:0005515
Vvi16g1332 573 SMART tpr_5 321 354 IPR019734 GO:0005515
Vvi16g1332 573 SMART tpr_5 237 270 IPR019734 GO:0005515
Vvi16g1332 573 SMART tpr_5 195 228 IPR019734 GO:0005515
Vvi16g1332 573 SMART tpr_5 449 482 IPR019734 GO:0005515
Vvi16g1332 573 Pfam Tetratricopeptide repeat 452 486 - -
Vvi16g1332 573 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 106 562 - -
Vvi16g1332 573 Gene3D Tetratricopeptide repeat domain 170 369 IPR011990 GO:0005515
Vvi16g1332 573 Gene3D Tetratricopeptide repeat domain 370 572 IPR011990 GO:0005515
Vvi16g1332 573 SUPERFAMILY TPR-like 198 436 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1332 - - vvi:100248697 1082.78