Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1330 ATGGACAGATCTCGATCGAAAAGGGGCTATTTCTATGAGCAGGACTATGATTCAGAAACTCTAGGAAGGACCAAACCCAGGTACAACAACAACAACAACCACGGCGGCCACCACTACAACACCAATAGCCACCACCGGCGTGGAGGCGCCGGCGCCGGACGGGCGTCGAAGCTGCAGGACTCGTCCGTAATGGTGACGACGAGCTACCGGATTTTGTGCCATGACGTCAAGGCCGGCGGCGTAATTGGAAAGTCCGGCAGCATTATCAAATCGATTAGGCAGCATACCGGAGCTTGGATCAACGTCCATGAATTGATTCCCGGCGACGAGGAGAGAATTATTGAGATTTCTGATACTCGCCGGCGAGACCCAGAGGGACGAATGCCCCAATTCTCGCCGGCGCAGGAGGCGTTGTTCATGATTCATGATAGGATTTTGGAGAGTGATGCTGGGTTTGGAAATGGGTTTGGTGGGAATGGTGACGATGATGATGATTTCGGGCCGCGCGGCGGCGGAAACCGGGTGGCAACGAGGATGGTGGTCTCTAGGATGCATGTGGGGTGTTTGTTGGGAAAGGGAGGGAAGATAATTGAACAAATGAGGATTGAGACCAAGACCCAGATTAGGATTCTGCCTAGAGATCACAATCTTCCCCGTTGTGTTTCCATGTCCGAGGAAATCGTGCAGGTGGTGGGTGATGTGAATGCTGTGAAGAATGCAATTGCAAATATTTCTTCACGCCTGAGGGAGAGCCAGCATCGGGACCGCAGTCATTTCCATGGACGAATACAGTCATCTCCAGAGCGGTTCTTCCCCCCTGATGACGATTATAGTCACATGAATAATGCACCTCGCCGTATGCCCATTGATGGGAACTCTTTTGGTTCACGTGTATCTACTGGTTTGGTGGGCACCAGAAGCAATAGCTTTGCCTCCCGCACATCTGGTTACACACTTGAATCTGGAGCTGCTCCTATTGCTGATAATGCACAGCAATTTTTAGGTGAGGATATTGTGTTTCGAATACTTTGCCCAGTTGACAAGGTTGAATGTGTTGTTGGGGAGTCAGATGGGATTATAGAATTGCTTCAGAATGAAATCGGTGTAGATGTTAAGGTTGCTGACCATGTAGCTGGATCAAATGAACAGATAATTGTCATTACTTCAGAGGAGGGCCCTGATGATGAGTTATTTCCTGCTCAAGAAGCTTTATTACATATCCAAACTCGTATTGTTAATCTTCTCCCCGATAAGGAGAATGTTATTACTACTAGGTTACTTGTTCCATCTAGTGAAATTGGATGCTTCGAGGGACGAGATTGCTCATTATCTGAAATGAGGAGATTAACCGGTGCCAACATACAGATCGTGCCAAGGGAACAGCTTCCTGCATTTATATCAGGGACCGATGAGCTTTTAGAGATTGTAGGGGAGATAAAAGCAGCTCGAGATGCTCTTGTTGAGGTGACATCAAGACTGCGGAGTTACTTATACCGGGAGTTCTTTCCAAAGGATATGCCACCACCTTCTATCTCTGCACCTGGCTCTCTTGAGGCATCTTCTCCCAATAACATAACCCCAGCTCGTGAAGGTCACACTGCAAGTGATCCTCCTACCACAAACTATCAGAATGTTCAAGCCATAGCATCAGTGCAGCCATCAAAGGACTCTGGAGGGACTGGTGGTGAAACAGTGAAGCAGAATGAAACTGTGCCAAGCGTTTTGAACAGAATCCCTGTAACGCTTGTCACCAGGAGTACACTTGAAGTTGTCATACCAGAACACGCAGTTCCCAAGCTCATAACCAGATCGAAAAACAAGCTTGCCCAGATCAGTGAGTGGTCTGGGGCCAATGTTACCCTGTTGGAAGATAGACTGGAGGCGACAGGAAAGATCATTCAAATATCAGGCACCCCTGAGCAGACTGAGAAGGCCCAGAGCTTGCTTCAAGGCTTTATTTTGAGCATTTCAGAAGACGGGCCATAA 1986 0.4829 MDRSRSKRGYFYEQDYDSETLGRTKPRYNNNNNHGGHHYNTNSHHRRGGAGAGRASKLQDSSVMVTTSYRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPQFSPAQEALFMIHDRILESDAGFGNGFGGNGDDDDDFGPRGGGNRVATRMVVSRMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIANISSRLRESQHRDRSHFHGRIQSSPERFFPPDDDYSHMNNAPRRMPIDGNSFGSRVSTGLVGTRSNSFASRTSGYTLESGAAPIADNAQQFLGEDIVFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAGSNEQIIVITSEEGPDDELFPAQEALLHIQTRIVNLLPDKENVITTRLLVPSSEIGCFEGRDCSLSEMRRLTGANIQIVPREQLPAFISGTDELLEIVGEIKAARDALVEVTSRLRSYLYREFFPKDMPPPSISAPGSLEASSPNNITPAREGHTASDPPTTNYQNVQAIASVQPSKDSGGTGGETVKQNETVPSVLNRIPVTLVTRSTLEVVIPEHAVPKLITRSKNKLAQISEWSGANVTLLEDRLEATGKIIQISGTPEQTEKAQSLLQGFILSISEDGP* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1330 661 MobiDBLite consensus disorder prediction 248 263 - -
Vvi16g1330 661 CDD KH-I_PEPPER_rpt2_like 177 249 - -
Vvi16g1330 661 Gene3D K Homology domain, type 1 65 148 IPR036612 GO:0003723
Vvi16g1330 661 Pfam KH domain 587 650 IPR004088 GO:0003723
Vvi16g1330 661 Pfam KH domain 177 245 IPR004088 GO:0003723
Vvi16g1330 661 Pfam KH domain 69 117 IPR004088 GO:0003723
Vvi16g1330 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 579 655 IPR036612 GO:0003723
Vvi16g1330 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 66 117 IPR036612 GO:0003723
Vvi16g1330 661 CDD KH-I_PEPPER_rpt1_like 66 139 - -
Vvi16g1330 661 Gene3D K Homology domain, type 1 584 655 IPR036612 GO:0003723
Vvi16g1330 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 170 255 IPR036612 GO:0003723
Vvi16g1330 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 331 396 IPR036612 GO:0003723
Vvi16g1330 661 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 59 489 - -
Vvi16g1330 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 414 502 IPR036612 GO:0003723
Vvi16g1330 661 ProSiteProfiles Type-1 KH domain profile. 174 244 - -
Vvi16g1330 661 MobiDBLite consensus disorder prediction 514 541 - -
Vvi16g1330 661 ProSiteProfiles Type-1 KH domain profile. 585 649 - -
Vvi16g1330 661 MobiDBLite consensus disorder prediction 248 272 - -
Vvi16g1330 661 MobiDBLite consensus disorder prediction 508 541 - -
Vvi16g1330 661 ProSiteProfiles Type-1 KH domain profile. 66 138 - -
Vvi16g1330 661 MobiDBLite consensus disorder prediction 23 38 - -
Vvi16g1330 661 CDD KH-I_PEPPER_rpt1_like 337 405 - -
Vvi16g1330 661 Gene3D - 336 497 - -
Vvi16g1330 661 Gene3D K Homology domain, type 1 171 253 IPR036612 GO:0003723
Vvi16g1330 661 SMART kh_6 336 409 IPR004087 GO:0003676
Vvi16g1330 661 SMART kh_6 173 249 IPR004087 GO:0003676
Vvi16g1330 661 SMART kh_6 65 146 IPR004087 GO:0003676
Vvi16g1330 661 SMART kh_6 584 654 IPR004087 GO:0003676
Vvi16g1330 661 SMART kh_6 420 494 IPR004087 GO:0003676
Vvi16g1330 661 MobiDBLite consensus disorder prediction 21 58 - -
Vvi16g1330 661 ProSiteProfiles Type-1 KH domain profile. 337 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1330 Vvi-Chr16 21779653 21784321 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1330 K21444 - vvi:100258944 1245.72