Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1306 ATGGCGGATCCTTATTGGAGGTACGGCGAAGTCAGGCAGCCGCCGCCGATTCCTTCTCTCTCCGCAAAACGACCTCGTTCTGATTACGATGTTCCTGGTGGCCATGATTTGCCCAGTTATTTTTCTCGTGAGGATGAAAGAGCAGCTCACCGTTCAATTAGGGATTCTGATTCCATTGGAGCATCCTATGATCGTTACCTGCGCAATGCACAGATGCCATCCTATGGTGGAGATTCTGGTCGGCCATTGAGCGGGGGAATAACTAGTCACCCTGTAGATGATCCACGTGTTGTGGGTGTTAGAGGTGTGGACCAAGGTGCAACTGTAAAAAGCCAGAGCTTAGGATTCAGTGGAGGAAGACCTGAGCTTCCCCTTCCTCCTGATGCTTCCAGTACATTGTTTGTGGAGGGCTTGCCTGCAAACTGTACCCGCAGAGAAGTATCTCATATCTTTCGCCCTTTTGTAGGCTACAAAGAAGTGAGACTTGTGAGCAAGGAATCAAGACATTCTGGAGGTGATCCATTGGTACTCTGTTTTGTTGACTTTGTGAGTCCAGCACATGCAGCCACTGCAATGGATGCTTTACAAGGTTATAAATTTGATGAGCATGACCGCGACTCGGTCAATTTAAGGCTTCAATTTGCTCGCTATCCTGGTGCGAGGTCAGGTGGCGGGCATCGTGGCAAGCGTTAA 693 0.4935 MADPYWRYGEVRQPPPIPSLSAKRPRSDYDVPGGHDLPSYFSREDERAAHRSIRDSDSIGASYDRYLRNAQMPSYGGDSGRPLSGGITSHPVDDPRVVGVRGVDQGATVKSQSLGFSGGRPELPLPPDASSTLFVEGLPANCTRREVSHIFRPFVGYKEVRLVSKESRHSGGDPLVLCFVDFVSPAHAATAMDALQGYKFDEHDRDSVNLRLQFARYPGARSGGGHRGKR* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1306 230 SMART rrm1_1 132 209 IPR000504 GO:0003723
Vvi16g1306 230 MobiDBLite consensus disorder prediction 1 53 - -
Vvi16g1306 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Vvi16g1306 230 Gene3D - 127 217 IPR012677 -
Vvi16g1306 230 MobiDBLite consensus disorder prediction 39 53 - -
Vvi16g1306 230 SUPERFAMILY RNA-binding domain, RBD 114 225 IPR035979 GO:0003676
Vvi16g1306 230 CDD RRM_AtNSRA_like 128 216 - -
Vvi16g1306 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 217 IPR000504 GO:0003723
Vvi16g1306 230 MobiDBLite consensus disorder prediction 73 96 - -
Vvi16g1306 230 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 21 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1306 Vvi-Chr16 21608209 21615189 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1306 - - vri:117933624 463.381