Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1304 ATGTGGTGGCCTTCTAACCTGGTTCAGGTTTCACTGTTCAGAGCTCTACATGAGAAGGAAAAGAGGCCTAAAGGCGGCACAACCCGGACTCAGTTCTTCCTCATAGTCTTTATTTGCAGTTTCACATACTATGTGGCTCCTGGGTATCTCATCAACATGTTAACATCTTTCTCCTGGGTCTGTTGGCTTGCTCCTAAATCCATTCTGGTGCAACAACTCGGGTCAGGCTTGGAAGGCCTAGGAATCGGCTCAATTGGGTTGGATTGGTCTACGATTTCATCATATCTAGGGAGTCCATTGGCTAGCCCCTGGTTTGCCACAGCCAACGTTGCCCTTGGATTCTGCCTAGTGATGTATGTGATGACACCTGCCACATACTGGAGCAATGTCTACAATGCCAAGAACTTCCCTCTATATTCTGAAAAGCTTTTCACGTCGAATGGTTCACGTTATAACATTTTAAGCATCATTGATTCTAACTTTCATCTTAGTAAAGAACAATATGTGAAGAGTGGGCCTTTAAATATGAGCACCTTCTTTGCTATGACCTATGGTCTCGGGTTTGCCACACTTTCTGCTACTATTGTCCATGTCGCACTCTTCAATGGCAGTGAGCTATGGAAACAAACAAAAGGTGCCTTTGGAGAGAAAAAGATGGATATACATACATGGCTTATGAAGAAGTACAAGTCAGTGCCCAATTGGTGGTTTTTTGTGATCCACGTTGTGAACATTGCCACTATCATATTTGCATGTGAGTATTACAATGACGTACTTCAGTTGCCATGGTGGGGTGTCTTGCTTGCTTGTGCCATTGCCTTTTTCTTCACCCTTCCAATCGGCATCATCACTGCTACAACAAACCAGACACCAGGTTTGAACATTGTAACAGAATATGTTATGGGATATATGTACCCAGGCCGTCCTGTTGCCAACATGTGCTTCAAGGTTTATGGGTACATCAGCATGACTCAAGCTCTAACCTTTCTGGCCGACTTCAAGCTGGGCCACTACATGAAGATTCCACCTAGATCAATGTTCATGGCACAGGTGGTAGGAACAGTTGTGGCTGTAATTGTATACGTGATAACTGCCTGGTGGCTGATGGCAACCATTCCCAACCTCTGTGATACCACTATGTTGCCTGCAGACAGTCCATGGAGATGCCCAATGGACAATGTCTTCTTCGATGCCTCTGTTATTTGGGGGCTTATTGGCACTCGCCGAATCTTTGGAAACCTGGGTGCCTACTCGAATGTCAACTGGTTCTTTCTGCTTGGAGCCATTGCCCCTCTCCTAGTCTGGCTCATGCACAAGGCATTCCCAAAAAAGAAATGGATTCCCCTTATCCACATGCCAGTCTTGTTAGGTTCCACAGCAATGATGCCCCCAGCCTCTGCTGTTAACTTCACGAGTTGGATCATTGTTGGGTTCCTCTCTGGATTTGTAATCTTCAGGCACAAACCAAAGTTGTGGGAGCGCTATAACTATGTTGTTTCTGGTGGTCTTGATGCTGGAACTGCCTTCATGACCATATTAATATTCCTTACCCTCGGGTCCAGGAATGTTAGCATCGACTGGTGGGGAAACAATCCAGAAGGATGCCCCTTGGCTTCATGCCCAACTGCCAAAGGAATTGTAGTTGATGGCTGCCCTGTTTTCTGA 1665 0.4583 MWWPSNLVQVSLFRALHEKEKRPKGGTTRTQFFLIVFICSFTYYVAPGYLINMLTSFSWVCWLAPKSILVQQLGSGLEGLGIGSIGLDWSTISSYLGSPLASPWFATANVALGFCLVMYVMTPATYWSNVYNAKNFPLYSEKLFTSNGSRYNILSIIDSNFHLSKEQYVKSGPLNMSTFFAMTYGLGFATLSATIVHVALFNGSELWKQTKGAFGEKKMDIHTWLMKKYKSVPNWWFFVIHVVNIATIIFACEYYNDVLQLPWWGVLLACAIAFFFTLPIGIITATTNQTPGLNIVTEYVMGYMYPGRPVANMCFKVYGYISMTQALTFLADFKLGHYMKIPPRSMFMAQVVGTVVAVIVYVITAWWLMATIPNLCDTTMLPADSPWRCPMDNVFFDASVIWGLIGTRRIFGNLGAYSNVNWFFLLGAIAPLLVWLMHKAFPKKKWIPLIHMPVLLGSTAMMPPASAVNFTSWIIVGFLSGFVIFRHKPKLWERYNYVVSGGLDAGTAFMTILIFLTLGSRNVSIDWWGNNPEGCPLASCPTAKGIVVDGCPVF* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1304 554 PANTHER ISP4 LIKE PROTEIN 1 553 IPR004648 GO:0055085
Vvi16g1304 554 Pfam OPT oligopeptide transporter protein 1 516 IPR004813 GO:0035673
Vvi16g1304 554 NCBIfam OPT family oligopeptide transporter 1 519 IPR004813 GO:0035673
Vvi16g1304 554 NCBIfam small oligopeptide transporter, OPT family 1 523 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1304 Vvi-Chr16 21600143 21602405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1304 1 554 Organic Solute Cotransporters AT4G27730 71.685 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1304 - - vvi:100257243 1132.86