LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g1301	ATGGGGGAAACGGTGCGGGAAGTGCTCTACGAGACGCGAAATCACGCTTCCAGACCTTATTGTTCCAATTACCCTCCTCAACAGCTAAATGAAGGTGCCAAAGGGAGTTTTCTGTCATTGCCTCGAGGTTTGAGTCAGATTAAAGAGAAATGGAGTGATTATAGGCGTCCAAAAAAATTGAAGAGATGGGTATCCTTGTTTGTCTCCCTGAGGGGTGAACGTGTGGCTGTAGCTGCTGGAAATCAGATAACCATTTTGCAGAAGGATGATAACTACCAGGAGCCATGTGGCATTTTTACAAGTAACAGCCTTGGGACATTTATATATGGAGCCTGGTCAGAATCTCATGATGTTCTTGGAGTTTGTGATGACTCTGAAACTCTATATTTTATCAAAGGAAATGGTGAAGAGATGGCAAGAAGTACGAGGGCACATTTAAAAGTTTCTTCACCGATAATAGGCCTGATTCCGCAGGATGATTCTGATACAAGAGGATCTTGCTTGTGTAGCTTCAATCTTCTTACATCAGATGGCTTCCTTCATAATATTGAGATCAGTCAGGATCCAGCTGTCTCCATTTCATCCTTTCGCACCTCGAGTAATGGCCTGACTTTAAAGAAGCAGTTCCCACAACATGTTTTCTGCTTGGACTACCATGTAAAACTTTCTTTGCTTATCGTGGTTGGTAGCGCCAGTAGCATATCAATCACCTCTAGTGGTACCACTGGATCCCATCATCTTTCTCTTTGGCGTAGAAGTAGTAGCTTAGATCTGGAACCAGTGTGCTCTACTCAGGTTGAAGGCTTATATTCCAAACCAAAAGGTTATATCGGTCAGATAACATCCTCAAAGGTGCTAATCTCACCACATGGGAAATTCGTGGCTACTCTAGATCTGACAGGATGCCTGGATATTTTTAAGCTGGATGGAGAATGCTGTTCCCTTTCAAGTTTTGCTTATGGAATGAGAAATGACTCACAAGAGACAGACAATTTGTCAAATGAAGTGGGAAAATTCTTAAATGGTATTGTGGATTTCACTTGGTGGTCTGATCATACCCTTGTACTTGCCAAAAGGAGTGGCACAGTGATCATGCTTGACATTCTTAGTGGTATAAAACTTCTGGGAAATGATCCTGTATATTCTATGCCTGTTTTAGAAAGAGTACAGCAGTTCCAAGGACAATTTTTTCTCTTAGAGAGCACTTCATCCGAGGAGAAACACAATATATCTACTCATGGTGAAACAGGTGATTTGCATCATATAGAGCTGGTTACAGAAGATAGACTTAATCAGGCTGACATTGCTAGATTACAATGGAGCTTGATATCATTTTCAGAGAGATCTGTTCCTGAAATGTATAATATTTTAATTAGCAATACAAAATATCAAGCAGCCTTGGAATTTGCTGTTCGCCATGGACTGGATACAGATGAAGTTTTAAAGTCACAATGGTTGCACTCTGGCCAAGGAATAAATGAAATAAACACGCTTTTGTCAAATATTAAAGATCAAGATTTTGTATTATCTGAATGTGTTAATAAAGTTGGACCAACGGAAGATGCTGTGAAGGCTTTACTTGCCTATGGGCTCCATCTAACTAGTCGGTGTAGGTTTTCTGAATCAGATGATCATGGGAATGGCCAAATTTGGGATTTTCGTAAAGTAAGACTACAGTTATTGCAGTTTAGAGACAGGCTGGAGACATTTCTTGGGATAAACATGGGCAGGTTCTCTGTGCAGGAATACAACAAATTTCGCATTATGCCTATCAATAAAGCTGCTGTTGCACTTGCTGAAAGTGGAAAAATTGGGGCCTTAAACCTCCTTTTCAAGCGTCATCCTTATACACTCACTCCTTCCATGTTGGAAATTTTAGCTGCTGTCCCTGAAACAATTCCAGTTCAAACATATGGGCAGCTCCTTCCTGGGAGGTCTCCTCCTACCAGTTTTGCTCTGAGGGAAGAAGATTGGGTTGAATGTGAAAAGATGGTAAGCTTTATCAACAGACTACCTGAGGATAAAGACAGCAGCGTTCGCATCAGAACTGAACCCATTGTGAGGCAGATCTTGGGATTCTCTTGGCCATCAGCTGATGAACTTTCTAGTTGGTACAAGAATAGAGCTAGAGATATTGATACTTTTAGTGGGCAGCTAGACAACTGCCTGTGCTTGATTGATTTTGCTTGTCGTAAGGGGATTGGGGAATTGCAGCAATTCTATGAGGATATCACATACTTGCACCAGCTTATATATTCTGATGGCAGTGATTCTGAAATAAATTTCACCATGAATCTTTGTGCATGGGAACAGTTATCTGACTATGAGAAGTTCAAGATGATGCTTAAGGGAGTCAAAGAAGAAAATGTCGTTGAAAGATTACGTGATAAAGCAATTCCATTTATGCAAAATAGTTTTCAAGATGTAACGTCACTTTCTGAAGCTCTAGTGGCAGATAGTATTTTTTCTGTAGATTATAAGAAGGCTGAGTCATTTCTGGTTAGATGGCTGAAGGAGGTTGCTTTGGAGAATAAATTAGACATTTGCTTGATGGTCATTGAGGAAGGGTGCAAGGACTTTGAAAGTACAGGCATTTTCAAGGATGAGGTTGAAGCTGCATATTGTGCTCTGCAGTGCTTATATTTGTGCACTGTTACAGATAGGTGGAGTACAATGAGTGCCATTTTATCAAAGCTTCCACATGTACAAGATACTGAAAAATATTTCAAGGGCCTTGAGCAAAGACTTAAGCTGGCTGAAGGACATATTGAAGCTGGGCGGCTGTTGGCATATTACCAGGTTCCAAAGCCATTAAATTTCTTTGTAGAGGCACATTCAGATGAAAAGGGTGTAAAACAGATTCTTCGTCTCATACTTTCAAAATTTGTTCGTCGACAGCCCAGCCGGTCAGATAATGATTGGGCAAACATGTGGCGTGATATGCAGTACTTGCAAGAAAAAGTATTTCCTTTTCTGGATCTAGAGTATATGTTGACTGAATTCTGTAGGGGACTGCTGAAAGCTGGGAAGTTTTCTCTCGCAAGGAATTATCTAAAGGGTACTGGTCCAGTTTCTTTGGCATCAGAGAAGGCAGAAAATCTAGTCATTCAAGCTGCAAGAGAGTATTTTTTCTCAGCTTCAAGTCTCGCTTGCTCCGAAATCTGGAAGGCTAAGGAATGTCTGAAGCTCTTTCCAGGTAGTAGAAATGTCAAAGCAGAGGCTGATGTAATTGATGCTCTCACTGTTAAACTTCCAGAACTAGGAGTCACTCTTTTGCCAATGCAATTTAGGCAAATAAAAGATCCTATGGAAATCATTAAAATGGCAATAACAAGTCAAGCTGGAGCTTATCTGCAGGTTGATGAACTCGTTGAAATTGCCAAACTCCTTGGATTGAATTCTCAGGATGATGTATCAGCTGTTGAAGAAGCTATTGCAAGAGAAGCTGCGGTTGCTGGTGATCTACAATTGGCCTTTGATCTCTGCCTTAGTTTGGCAAAGAAAGGACATGGTCCCATTTGGGACTTATGTGCTGCTATAGCAAGGGGTCCTGCTCTTGAAAACATGGATATAAATTCTCGAAAGCAGCTACTGGGTTTTGCCTTGAGTCATTGTGATGAGGAATCCATTGGTGAACTGCTACATGCATGGAAAGATCTAGATACGCAAGGCCAGTGTGAGACATTGATGATGTCGACAGGGACAAATCCTCCCAATTTCTCAATTCAAGGTTCCTCTGTTATCTCACTTCCAGTTCACAGTATTCAAGATATTATTAATCTAAGAGATTGCTCTAAACTAGTTGAAGGGGTTGACAATGTTGATCAAGAAGATCATTTCAATGACATAAAAAACATGCTTTCTGTTGTTGCTAAAGATTTACCCTTGGAAAATGGGACTGATTGGGAATCTCTTTTGAGAGAGAATGGAAAAATTTTGTCTTTTGCTGCATTGCAGCTTCCATGGTTGCTTGAATTGAGTAGGAAAACAGAACATGGTAAGAAATATATTCCTAGCTCAATTCCTGGAAAGCAGTACATAAGTGTGAGAACTGAAGCTATATTGAGCATTCTGTCCTGGTTGGCAAGGAATGGTTTTGCTCCTAGAGATGATCTGATTGCCTCTCTAGCAAAATCAATTATAGAACCACCTGTTACTGGGGATGAGGATCTCATGGGTTGCTCCTTTCTGCTAAATCTTGTGGATGCCTTTAATGGGATTGAAATAATAGAAGAGCAGCTGAAAACAAGATTGGATTATCAAGAAATTTCTAGCATGATGAAGGTGGGGATGACATATAGTTTAGTACACAGCTCTGGAGTTGAGTGTGAAGGTCCTGCCCAGAGGAGGGAGCTGCTGCTGAGGAAGTTTCAGGAGAAGCACATGTCACATAGTTTGGATGAAATAGACAAACTTGACAAAGTACAATCTACTTTTTGGAGAGAATGGAAACTAAAATTAGAAGAGCAGAAGCGCTTAGCAGATCATTCTAGAGTATTAGAGAAAATAATTCCTGGAGTGGAAACTGCCCGCTTTTTGTCTGGGGATTTTGCCTACATTAAGAGTGTTGTTCTCTCACTAATTGAATCAGTAAAGTTGGAGAAGAAACATATTTTGAAGGATGTATTGAAATTAGCTGATACATATGGCTTGAATCACACTGAGATGCTATTGCGGTTCCTAAACTCTGTCCTTATTTCTGAGGTTTGGTCTGAAGATGATATCATAGCTGAATTTTCAGAAGTTAAGGGTGAAATGCTTGCTTGTGCTGTTGAAGCTATCAAGATCATTTCCTTGATTATCTACCCCGCAATTGATGGAAGCAACAAACCACGCCTTGCTTACATATATAGCCTGCTTTCTGATTGCTACTTGAAGTTGGAAGAAATCAAACAACCATTACCAGTTATACATTCTGAGCCAGTACAAGCATCTACTATTGGGCTAGCTCATTTTTACAAGGTCGTTGAGCAAGAATGCAGAAGAGTCTCCTTTATTAAGAATCTTAACTTCAAAAATATTGCTGTATTAGGTGGTTTGAACATCAAATGCTTCAAAAGTGAAGTTCTCAATCACATTGATGAACATAGCTTGGAGGCATTGGCAAAAATGGTGCAAAACCTTGTCAACATGTATACTAACCCGATGCCTGAGGGTCTCATATCATGGCAGGATGTATACAAACACCATGTTCTGAGCTTGTTGATGGCTTTGGAGGCTAGAGCTAAAACTGATAACCATATTGAAAACCCTGAAAACCTTCAGAGCTTAATTAGTGAACTTGAGCAGAACTATGATTCTTGCAGACTGTATATCAGAGTCTTGGGACATTCAGATTCTCTGGACATTATGAAGAGATACTTCACAGTGATCATTCCTCTTAAGGGTTATTCAGAGGGTCTACCTGATAACTCAACATGGCAGGACTGCCTCATTGTGCTTTTAAATTTTTGGATCAAACTGACTGATGATATGATGGAAACTGTGTCCCATGAAACTTCAAGAGAAAAACTCGAGTTTGATCCAGAGAGTTTAACGAAGTGTCTCAAGGTTTTCATAAGGTTGGTGATGGAGGAGAGTGTCTCCCCCAGTCAGGGCTGGAATACTGTTCTTGGCTATGTCAATTATGGTCTGGTAGGTGGATCTGCTGTTGAGGTTTTCTTCTTTTGCAGAGCTATGGTTTTCTCTGGTTGCAGATTTGGAGCCATTGCAGAAGTATTTTCTGAAGCAGCATTGAAGTGTCCATCCAGCTCAACTTTGTTAATTGACATGGAAGGAAACTTTGATGGTGTTCAGGATCTTCCCCATCTCTATTTAAATATATTGGACCCCATTTTACAGAACTTGGTTGCTGAATCCCATGAACACCAGAATTTACATCGTTTGTTATCATCTCTGAGTAAATTGGAAGGTAATTTGGAGGACCTGACGAGGGTCAGGCATGCAGTTTGGGAGAGAATAGTCATGTTTTCTGATAACTTGGAGCTACCAAGTCATGTTCGAGTTTATGCTCTAGAGCTTATGCAATTCATCTCAGGTGGAAATATCAAAGGCTTTTCTGCTGAGCTGAAATCTAACATTCTTCCATGGGAAGATTGGCATGAGTTGCACTTCACAAGTAAAAGCAGCGAGACTACTACCAATCAAGGACTCCCAGATCATGCAGATACATCTAGCAGGTTTACGAGTACTTTGGTTGCCCTTAAATCATCCCAGCTGGTAGCAGCCATCTCATCCAGCATAGAAATTACCCCTGATGATCTTTTGACTGTGGATGCGGCAGTTTCACGCTTCTCAAGATTGTGTGGAGCTGCCACCACGGATCCTCATATTGATGCTCTGCTTGCTGTTTTAGGTGAATGGGAAGGGCTTTTTGTGATTGAGAGGGACTTTGAAACTTCTCCAGAAGCACATGATACAGGAAACAACTGGAGCAGTGAGGATTGGGATGAGGGCTGGGAAAGCTTTCAGGAGGAAGAACCGGCTGAGAAGGAAAAGAACAAAGAGAGTTCCTTCTCTGTTCATCCTTTACATGCCTGTTGGATGGAAATCTTCAAAAAACTCATTATGCAATCTCGATTCAGCGATTTGCTAAAACTGATCGACCGGTCATTGACAAAATCAAATGGAATGTTGCTTGATGAAGATGATGCCCAGAGCTTGACCCAGACAGTACTTGGGGTGGATTGCTTTGTTGCTCTGAAGATGGTGTTGTTACTGCCCTATGAAGCAATGCAGCTGCAGTGTGCAAATTCAGTTGAAGAAAAGCTAAAACAAGGAGGCATCTCAGACACCATTGGCAGAGACCATGAGCTTTTACTCCTTATATTATCATCCGGGATCATATCAAATATCATCACCCAATCTTCCTATGGTACCACCTTCTCTTATCTCTGCTATTTGGTTGGAAACTTCTCTCGCCAGTATCAAGAAGCCCAGTTATCAAAGCTCAAACATCAAGAATCAAACAATCCCATTCTGCTTCTCTTCAGAAGAACTCTCTTCCCTTGTTTCATCTCAGAGCTTGTCAAGGCAGACCAGTCGATTCTAGCAGGCCTGTTCCTCACAAAATTCATGCACACAAATGCTGCCCTCAGTCTCATCAACATCGCCGATTCCAGTCTTAGCAGGTACTTGGAAAGGGAGCTCCTAGCCTTGCAGGGTAAGGAGTTCGATCCCCAAGAGACTGGTTCCTGTGACACGTTGGGAAATACTGTTTCCAGCTTGAGAGGGAAATTGCGAAATTCCATCGAATCTGCATTGGCATCCCTTTCCAGCAATGTTAGGTAG	7290	0.4115	MGETVREVLYETRNHASRPYCSNYPPQQLNEGAKGSFLSLPRGLSQIKEKWSDYRRPKKLKRWVSLFVSLRGERVAVAAGNQITILQKDDNYQEPCGIFTSNSLGTFIYGAWSESHDVLGVCDDSETLYFIKGNGEEMARSTRAHLKVSSPIIGLIPQDDSDTRGSCLCSFNLLTSDGFLHNIEISQDPAVSISSFRTSSNGLTLKKQFPQHVFCLDYHVKLSLLIVVGSASSISITSSGTTGSHHLSLWRRSSSLDLEPVCSTQVEGLYSKPKGYIGQITSSKVLISPHGKFVATLDLTGCLDIFKLDGECCSLSSFAYGMRNDSQETDNLSNEVGKFLNGIVDFTWWSDHTLVLAKRSGTVIMLDILSGIKLLGNDPVYSMPVLERVQQFQGQFFLLESTSSEEKHNISTHGETGDLHHIELVTEDRLNQADIARLQWSLISFSERSVPEMYNILISNTKYQAALEFAVRHGLDTDEVLKSQWLHSGQGINEINTLLSNIKDQDFVLSECVNKVGPTEDAVKALLAYGLHLTSRCRFSESDDHGNGQIWDFRKVRLQLLQFRDRLETFLGINMGRFSVQEYNKFRIMPINKAAVALAESGKIGALNLLFKRHPYTLTPSMLEILAAVPETIPVQTYGQLLPGRSPPTSFALREEDWVECEKMVSFINRLPEDKDSSVRIRTEPIVRQILGFSWPSADELSSWYKNRARDIDTFSGQLDNCLCLIDFACRKGIGELQQFYEDITYLHQLIYSDGSDSEINFTMNLCAWEQLSDYEKFKMMLKGVKEENVVERLRDKAIPFMQNSFQDVTSLSEALVADSIFSVDYKKAESFLVRWLKEVALENKLDICLMVIEEGCKDFESTGIFKDEVEAAYCALQCLYLCTVTDRWSTMSAILSKLPHVQDTEKYFKGLEQRLKLAEGHIEAGRLLAYYQVPKPLNFFVEAHSDEKGVKQILRLILSKFVRRQPSRSDNDWANMWRDMQYLQEKVFPFLDLEYMLTEFCRGLLKAGKFSLARNYLKGTGPVSLASEKAENLVIQAAREYFFSASSLACSEIWKAKECLKLFPGSRNVKAEADVIDALTVKLPELGVTLLPMQFRQIKDPMEIIKMAITSQAGAYLQVDELVEIAKLLGLNSQDDVSAVEEAIAREAAVAGDLQLAFDLCLSLAKKGHGPIWDLCAAIARGPALENMDINSRKQLLGFALSHCDEESIGELLHAWKDLDTQGQCETLMMSTGTNPPNFSIQGSSVISLPVHSIQDIINLRDCSKLVEGVDNVDQEDHFNDIKNMLSVVAKDLPLENGTDWESLLRENGKILSFAALQLPWLLELSRKTEHGKKYIPSSIPGKQYISVRTEAILSILSWLARNGFAPRDDLIASLAKSIIEPPVTGDEDLMGCSFLLNLVDAFNGIEIIEEQLKTRLDYQEISSMMKVGMTYSLVHSSGVECEGPAQRRELLLRKFQEKHMSHSLDEIDKLDKVQSTFWREWKLKLEEQKRLADHSRVLEKIIPGVETARFLSGDFAYIKSVVLSLIESVKLEKKHILKDVLKLADTYGLNHTEMLLRFLNSVLISEVWSEDDIIAEFSEVKGEMLACAVEAIKIISLIIYPAIDGSNKPRLAYIYSLLSDCYLKLEEIKQPLPVIHSEPVQASTIGLAHFYKVVEQECRRVSFIKNLNFKNIAVLGGLNIKCFKSEVLNHIDEHSLEALAKMVQNLVNMYTNPMPEGLISWQDVYKHHVLSLLMALEARAKTDNHIENPENLQSLISELEQNYDSCRLYIRVLGHSDSLDIMKRYFTVIIPLKGYSEGLPDNSTWQDCLIVLLNFWIKLTDDMMETVSHETSREKLEFDPESLTKCLKVFIRLVMEESVSPSQGWNTVLGYVNYGLVGGSAVEVFFFCRAMVFSGCRFGAIAEVFSEAALKCPSSSTLLIDMEGNFDGVQDLPHLYLNILDPILQNLVAESHEHQNLHRLLSSLSKLEGNLEDLTRVRHAVWERIVMFSDNLELPSHVRVYALELMQFISGGNIKGFSAELKSNILPWEDWHELHFTSKSSETTTNQGLPDHADTSSRFTSTLVALKSSQLVAAISSSIEITPDDLLTVDAAVSRFSRLCGAATTDPHIDALLAVLGEWEGLFVIERDFETSPEAHDTGNNWSSEDWDEGWESFQEEEPAEKEKNKESSFSVHPLHACWMEIFKKLIMQSRFSDLLKLIDRSLTKSNGMLLDEDDAQSLTQTVLGVDCFVALKMVLLLPYEAMQLQCANSVEEKLKQGGISDTIGRDHELLLLILSSGIISNIITQSSYGTTFSYLCYLVGNFSRQYQEAQLSKLKHQESNNPILLLFRRTLFPCFISELVKADQSILAGLFLTKFMHTNAALSLINIADSSLSRYLERELLALQGKEFDPQETGSCDTLGNTVSSLRGKLRNSIESALASLSSNVR*	2430

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g1301	2429	Coils	Coil	1959	1979	-	-
	Vvi16g1301	2429	PANTHER	NEUROBLASTOMA-AMPLIFIED SEQUENCE	6	2423	-	-
	Vvi16g1301	2429	SUPERFAMILY	WD40 repeat-like	61	371	IPR036322	GO:0005515
	Vvi16g1301	2429	MobiDBLite	consensus disorder prediction	2135	2169	-	-
	Vvi16g1301	2429	Pfam	Secretory pathway protein Sec39	595	901	IPR013244	GO:0006890
	Vvi16g1301	2429	Pfam	Secretory pathway protein Sec39	916	1221	IPR013244	GO:0006890

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g1301	Vvi-Chr16	21554672	21568905	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g1301	K20473		-	vvi:100258836	4754.89