Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1292 ATGCTGCAGAATCCTCTGAAGGGCAATTCGGTCATTTCTATGCTCATCTCCGGCACTTCCGGCGGAGGACTCTGGTCATCGGCGACGGCGACTTCCAATGCTGGATTAGCCATCGCCGTCACGGCCTTCGCCGGACTCGCCTTGATCGCTGCCGCTGTCTGTTTCGCTAGTAGTGGGCGTCTCAAATCACCATGGTCTCGCAAGAAAAAGAAACACGCACTTTCACCTCGCCAATGGAGAAATATGCTCACTCCTGATGGGAAACTCCGTGATGGTGGAGTTAAGTTAGTGAAGAAAGTTCGCAGTGGAGGTGTTGATCCAAGTATCAGAGCAGAAGTTTGGCCGTTCCTGCTAGGAGTCTATGACTTGAACAGTTCCAAAGAAGAAAGAGACATTGTGAAAACTCAAAATAGAAAGGAATATGAGAAACTTAGGAGAGAGTGTCGGCGACTGCTAAAACACAGTGGTGAGAGCTATAAATTGAAGGAAAGTGGTGGAACCTGTGGCAATGGTGAGAATGGGAGTTTTATTCATGACACAGATTCTCCTGACTCTGAAGATGTGGTTAGTGCAAGGGAGTCCCTTTCTAGTGAGGAAAGGAGCCCAGATGGCGAGTACTCAGACCACCCTTCCAGTACATTGCTGGAAGGAGAGGATGTTTCAAGACGAATCACATGTGCAAGTTCCTCTGTACTCAACTCGGAGTCATCTGACTCGGACTCTTCTGAAGACCCTGATGTGAGTCAAACTTTCCCCTGCATGGAAAGCAGGGAAGAGGATGACCCAGACATGCCTACTGGGGAGGATTCTTCTCCTTCCAAAACAGAAGTACATTCGAAAATCCGTACTGCCGAGGATTTTGCCACATGGCAGCGGATCATCCGTGTTGATGCAGTGCGTGCCAATTCAGAGTGGATCCCATACTCACCAGCTCAGGCTGCAGTATCGGAAGGCAGAGCACGCTGTTCTGCAGAGGCTGTTGGGTTGAAGGATTATGATCACCTTGAGCCCTCCAGGATATTCCATGCTGCTCGTCTTGTTGCCATTCTTGAAGCCTATGCACTTTATGACCCTGAAATTGGCTACTGCCAGGGCATGAGTGATCTACTTTCTCCAATTATTTCTGTGATACTGGAGGACCACGAGGCTTTCTGGTGTTTTGTGGGTTTCATGAGAAAGGCCCGACACAATTTTAGACTCGATGAGATAGGCATCCGAAGGCAACTCAACACAGTCTCCAAAATCATCAAAAGCAAGGACTCCCACCTCTATAGACACTTAGAAAAGCTCCAAGCCGAGGACTGCTTTTTTGTCTATAGGATGGTGGTGGTACTCTTCAGGAGGGAATTATCCTTCGAGCAGACAGTCTGCCTGTGGGAGGTAATGTGGGCAGATCAGGCAGCCGTTAGGGCTGGGATCGGAAAGTCTGCATGGAGTAGAATAAGGCAGCGGGCACCACCAACTGATGACCTGTTGCTTTATGCTATTGCAGCCTCAGTTCTCCAGAAGAGAAAACTGATTATAGAGAAGTATAGTAGCATGGATGAGATCATAAGGGAATGCAACAGCATGGCTGGCCACCTTGATGTGTGGAAGCTCTTAAACGACGCCCATGACTTGGTAGTCAGTCTCCACGACAAGATAGAGACGCCCTTTTGA 1659 0.4882 MLQNPLKGNSVISMLISGTSGGGLWSSATATSNAGLAIAVTAFAGLALIAAAVCFASSGRLKSPWSRKKKKHALSPRQWRNMLTPDGKLRDGGVKLVKKVRSGGVDPSIRAEVWPFLLGVYDLNSSKEERDIVKTQNRKEYEKLRRECRRLLKHSGESYKLKESGGTCGNGENGSFIHDTDSPDSEDVVSARESLSSEERSPDGEYSDHPSSTLLEGEDVSRRITCASSSVLNSESSDSDSSEDPDVSQTFPCMESREEDDPDMPTGEDSSPSKTEVHSKIRTAEDFATWQRIIRVDAVRANSEWIPYSPAQAAVSEGRARCSAEAVGLKDYDHLEPSRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIISVILEDHEAFWCFVGFMRKARHNFRLDEIGIRRQLNTVSKIIKSKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTVCLWEVMWADQAAVRAGIGKSAWSRIRQRAPPTDDLLLYAIAASVLQKRKLIIEKYSSMDEIIRECNSMAGHLDVWKLLNDAHDLVVSLHDKIETPF* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1292 552 MobiDBLite consensus disorder prediction 179 206 - -
Vvi16g1292 552 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 268 398 - -
Vvi16g1292 552 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 63 521 - -
Vvi16g1292 552 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 268 398 - -
Vvi16g1292 552 FunFam GTPase-activating protein gyp7 isoform X1 402 547 - -
Vvi16g1292 552 Gene3D - 402 548 - -
Vvi16g1292 552 SMART tbc_4 101 489 IPR000195 -
Vvi16g1292 552 Pfam Rab-GTPase-TBC domain 345 465 IPR000195 -
Vvi16g1292 552 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 402 541 IPR035969 -
Vvi16g1292 552 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 93 426 IPR035969 -
Vvi16g1292 552 MobiDBLite consensus disorder prediction 223 249 - -
Vvi16g1292 552 Coils Coil 134 154 - -
Vvi16g1292 552 ProSiteProfiles TBC/rab GAP domain profile. 104 466 IPR000195 -
Vvi16g1292 552 MobiDBLite consensus disorder prediction 160 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1292 Vvi-Chr16 21461811 21468288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1292 - - vvi:100243483 964.14