Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1290 ATGGCTTGTTCGTCTCGCTCACTCCTCTCGTTCTCCTCCGTACGACGATCGCAGCCCTCCATCCCCTTAATCTCACCGCTGGTTGCACAGAAACCTCGTTCCTGCACTCTCGCTCTCAGATCAAAAGGGGTTTCTCTGATCTGCTCGAATCCGAAGAAATTTAGAGCTAGAACGAGGTCATCAATGGCGGAGGTTACAGCTGACAACGGGAAAGGAAAGGTGAAGGTGTTTGATTCTGAGGAAGAAGTGGCGGTGGGTCTGGCGAAGTACACCGCGGATATATCGAATAAGATCACTAACGAGAAGAGTTCATTTACTGTTGTTTTGTCTGGAGGTTCTCTGATCCATTCATTGAGGAAATTAGTTGAAGCACCATACATCGATTCAATAGAATGGGGGAAATGGCATGTTTTCTGGGTGGATGAGAGAGTTGTTCCCAAGGATCATGTGGACAGTAACTACAAGCTTGCATATGATGGTTTCCTCTCTAAGGTACCAATACCCCCTGGTCAAGTTTATGCCATCAACGATGCTCTGTCAGCCGAGGGTGCAGCTGATGACTATGAGACCTGCCTCAAACATTTGGTAACAAACGGTGTGTTGCACGTCTCAGCAAAGACTGGCTTTCCAAAATTTGATCTCATGCTACTGGGTATGGGCCCAGATGGTCATGTTGCTTCTCTATTCCCAGGGCATCCTCTTGTAAAAGAGAATAAGAAATGGGTTACATTCATCAAGGATTCTCCAAAACCACCTCCCGAGAGAATCACTTTTACCTTTCCGGTCATCAATTCATCTGCATATATCGCCATGGTAGTGGTTGGTGCTGGTAAAGCACCTGTGATTGAGGCAACATTGGGAAAAAGTCCAAATTCTGAGGTGCTGCCTGTTGGAATGGTTTCACCTGAAGACGAGATGACTTGGTTTTTCGACAAGCAAGCAGCTTCGAAGATATAG 957 0.465 MACSSRSLLSFSSVRRSQPSIPLISPLVAQKPRSCTLALRSKGVSLICSNPKKFRARTRSSMAEVTADNGKGKVKVFDSEEEVAVGLAKYTADISNKITNEKSSFTVVLSGGSLIHSLRKLVEAPYIDSIEWGKWHVFWVDERVVPKDHVDSNYKLAYDGFLSKVPIPPGQVYAINDALSAEGAADDYETCLKHLVTNGVLHVSAKTGFPKFDLMLLGMGPDGHVASLFPGHPLVKENKKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVVGAGKAPVIEATLGKSPNSEVLPVGMVSPEDEMTWFFDKQAASKI* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1290 318 SUPERFAMILY NagB/RpiA/CoA transferase-like 73 318 IPR037171 -
Vvi16g1290 318 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 79 308 IPR006148 GO:0005975
Vvi16g1290 318 NCBIfam 6-phosphogluconolactonase 76 318 IPR005900 GO:0005975|GO:0006098|GO:0017057
Vvi16g1290 318 CDD 6PGL 81 309 IPR005900 GO:0005975|GO:0006098|GO:0017057
Vvi16g1290 318 PANTHER 6-PHOSPHOGLUCONOLACTONASE 29 317 IPR039104 -
Vvi16g1290 318 FunFam Probable 6-phosphogluconolactonase 69 318 - -
Vvi16g1290 318 Gene3D - 67 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1290 Vvi-Chr16 21450961 21454208 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1290 K01057 - vvi:100248620 630.943