Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1283 ATGGAGGCCGCGGCCAGTGTCGCCGCCGCCTCACGCGTCGGTTCTCTCCCGATTCCGGCTTCCAGGAAGGAGTGGCGGGTGGTGACGGAGCCCCATTCGGTTCGGAACCCCGGGGATGAGGAGTTGGAGCGTTCGAAGCTGGGTCAATCGGATGAGAGAACGATATATGAGCAGGGAAGAGAGCCGCTGGATGTGGATTTCTGTTCAATCACTATCGATGGAAGCTTAGACAACGACATTTTGCAGCAGCGACTTCATACTATTGCACACCAGAGGGAGGAGCTGCAACAGATGGAGATTGAGCTTAGAGCTCAGGTGATTGCGAGATCAGAGGTGATGGAAATGCAGAACAGCTTTGATGCCCAAATCAAAGACCATGCTAATGCCGCCGTCAAGCTTCAGGAGCAAGTCCATGAAAGGGAACAGACAATACATGAACTGGAAAGGAGGATGGAAGACAAAGATAGGGAGTTACATGAAATCAAATTAGACAATGAAGCGGCCTGGGCTAAAGAGGACCTTCTGAGAGAACAGAACAAAGAATTGGCTACCTTCCGAAGGGAGCGTGATAATTCTGAAGCTGAAAGAGCTCAACATCTGAAACAAATACATGACCTTCAAGAACACATTCAAGAAAAGGAGAGGCAACTTATCGAGTTGCAGGACCAGCATAGAGTTGCTCAGGAGACCATTCTTTATAAAGATGAACAGTTAAGGGAGGCCCAAGCTTGGATTACTCGTGTTCAAGAGATGGATGCGTTGCAATCAACTACAAATCACTCATTACAAGCTGAGTTGCGAGAACGCACAGAACAATATAACCAGCTTTGGCTTGGTTGTCAGAGACAGTTTGCAGAGATGGAAAGACTTCATTTGCATGCGATTCAGCAGCTACAGCATGAGTTGGCCGATGCTAGAGAAAGGAGTGGAACTTACACTGATGAGCCGCGCGTATCCCAAACAAATTCGAAGGATGTATCTCAATTTGGGCAGAACAATGGAAGCCAACTGGATGTAAATGGAAGTGGAACTTCCAGTGGGAACTCTGGGGTACTTTCAAATGGGAATGCTGACACTGTTCCACCTTTTGTTTCAACTGGCAATGCATCAAGCCAGGCTGAGCATGTTCCTGGTGTTGTTCCAATTGCTCCATCATCTTTACTTGGGATGCCTACCTATCTGCCACCTGGACAGGTGACTGCAATGCATCCGTTTGTTATGCATCAACAGGGAGTTCCCCATTCTGTACCATCACATGTTCCTCAATCTCATGTTGGACACTTCCATTCAATGCCAGCGATTTCATCAGTCCCACACTGGCAGAACCAACAGGCTGTATCAGAGGGTGCACAGATATCAATGCACAATCCATATGCACCAGCTCAAACTGATCAAAACATATTGAAAGCGGATGCTAATTATGAGTATGAATTGTCTGTAAATGGGCAAGCTCTTCAGCCAGACTACTTGGATGTTCAAATCAACCAAGGGGTGGAACGTGATTCTGTAATCCCATCACCCACTGAAGAAAAAAAGGTTCTTGAGTCAATTGATAAGAGTTACTTGGTAAGCCCCCAACCTCAGCAGAGCTTGCAACAAATTTCTTCCCAGTTTCATGAAGCTTTAAGACTGAACCCTCTTGAACAGAACAGTGAGAAGGACAACAATACTATCACTTTGACTAATCATGCACTGGAGAGCCAAGGTTTGACTGCAGAGCAACCAAGTCCTGCTGCCAGTACAACACCGTCTGATACATCAAATCATCCAGTAAATTTTGGTGAAATTTCAATTAGTAATGTGACTAGTACGGTTTTGCCTGAAGCATATGTTTCGGCAAGGCAGCCAAATACATTGGCAACGGGAAAAACTACAGAGGTAACCCTCCTTGATGAAAGATCGTTGTTGGCTTGCATTGTTCGGACAATTCCATCTGGATCTGGTGGTAAAATTCGGATTAGTTCAACGCTCCCAAATAGGCTTGGCAAAATGCTTGCACCTCTGCATTGGCATGATTATAAGAAAAAATATGGAAAGCTTGATGACTTTGTCGCCAGTCATCCTGAACTATTTGTAATTGAAGGGGACTATATTCATCTTCGAGAAGGTGCACAAGAAATGATCGCAGCCACAGCAGCAGTTGCAAAAGTTGCTGCTGCAGCTGCAGTGTCATCACCATACTCATCTTTGTTGCCTTCTGTGGCTGTCACTCCCATGGCACAATCTCACCGACAGAAGAAGGTTCCATCTATCGATTCCAAACATGTGAAGACTGAAAAGACCGTTTTCAAGGAGTATGCAGTTACTCCGGCAAGTGCAGCTGATAATTCTTCACAACTCTTGGCAATGCAAAATCAGCAATCCAATGGTGTTTATTTTAATGCCAGTGGAGGTTTCTCAAATATAAAAATTTTGAGCAAATCCAAAGATGCTGTGGAAATGAATGGCCCTGAAATTAGGCCTGGCCAGTCATCTGTGTTTATGACAGCTGGGAATGGAGCAAATCCTGATAGATCTGGCGTGGCCAGTACTCAAAACAAGGGGTCAATTAATGGGAGGTCTGGTGCACATTTTGTTGGGAAACAGTCGGGCAGGACAACTGGGGCTGCATCAACCCCTAGAAGATAG 2628 0.457 MEAAASVAAASRVGSLPIPASRKEWRVVTEPHSVRNPGDEELERSKLGQSDERTIYEQGREPLDVDFCSITIDGSLDNDILQQRLHTIAHQREELQQMEIELRAQVIARSEVMEMQNSFDAQIKDHANAAVKLQEQVHEREQTIHELERRMEDKDRELHEIKLDNEAAWAKEDLLREQNKELATFRRERDNSEAERAQHLKQIHDLQEHIQEKERQLIELQDQHRVAQETILYKDEQLREAQAWITRVQEMDALQSTTNHSLQAELRERTEQYNQLWLGCQRQFAEMERLHLHAIQQLQHELADARERSGTYTDEPRVSQTNSKDVSQFGQNNGSQLDVNGSGTSSGNSGVLSNGNADTVPPFVSTGNASSQAEHVPGVVPIAPSSLLGMPTYLPPGQVTAMHPFVMHQQGVPHSVPSHVPQSHVGHFHSMPAISSVPHWQNQQAVSEGAQISMHNPYAPAQTDQNILKADANYEYELSVNGQALQPDYLDVQINQGVERDSVIPSPTEEKKVLESIDKSYLVSPQPQQSLQQISSQFHEALRLNPLEQNSEKDNNTITLTNHALESQGLTAEQPSPAASTTPSDTSNHPVNFGEISISNVTSTVLPEAYVSARQPNTLATGKTTEVTLLDERSLLACIVRTIPSGSGGKIRISSTLPNRLGKMLAPLHWHDYKKKYGKLDDFVASHPELFVIEGDYIHLREGAQEMIAATAAVAKVAAAAAVSSPYSSLLPSVAVTPMAQSHRQKKVPSIDSKHVKTEKTVFKEYAVTPASAADNSSQLLAMQNQQSNGVYFNASGGFSNIKILSKSKDAVEMNGPEIRPGQSSVFMTAGNGANPDRSGVASTQNKGSINGRSGAHFVGKQSGRTTGAASTPRR* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1283 875 Coils Coil 130 164 - -
Vvi16g1283 875 MobiDBLite consensus disorder prediction 833 875 - -
Vvi16g1283 875 MobiDBLite consensus disorder prediction 29 50 - -
Vvi16g1283 875 MobiDBLite consensus disorder prediction 306 371 - -
Vvi16g1283 875 MobiDBLite consensus disorder prediction 567 594 - -
Vvi16g1283 875 MobiDBLite consensus disorder prediction 860 875 - -
Vvi16g1283 875 Coils Coil 175 230 - -
Vvi16g1283 875 PANTHER OS08G0543600 PROTEIN 1 875 - -
Vvi16g1283 875 MobiDBLite consensus disorder prediction 833 852 - -
Vvi16g1283 875 Coils Coil 78 98 - -
Vvi16g1283 875 Coils Coil 295 315 - -
Vvi16g1283 875 MobiDBLite consensus disorder prediction 314 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1283 Vvi-Chr16 21369890 21376087 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1283 - - vvi:100252015 1660.97