Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1281 ATGCAGCAGCAACCACCACAGATGATGAACATTGCGCCTTCATTTCCTCCCACCGCCATCACCACTGAGCAGATTCAGAAGTATCTGGATGAGAACAAACAATTGATTCTGGCAATTCTGGAAAACCAGAACCTTGGAAAACTCGCCGAGTGTGCCCAATATCAAGCCCAGCTTCAGAAGAACTTGATATATCTAGCTGCAATTGCTGATGCCCAACCACCAGCACCAACAGTGCCTCCTCAGATGCCTATACATCATGCCATGCAACAAGGGCATTACATGCAACACCCTCAGGCTGCTGCAGCTCAGCAACAACCAGGCATGTTTGGTGCAAAGTTGCCTTTCCAGCTTAGCGATCAGCAACAGCAGCAGCAGCATCATCTTCTACACCTCCAACAACAGCAACCCATCCAAGGGCTCATGGGCATGAGGCCTATCATCAACAATGGCATGCATCAGGCCATGCAAACTGGGCTTGGTGCTTTGAGCGGTCTCATGGATGTACGTGGAAGCAAGCCAGATGGCTCAGAGGTTGGTTCTGGTGATGGCCAAGGGAAGTCTGCTTCTGGACATGGCAGTGGAAATAGAGATTCCTAA 597 0.5008 MQQQPPQMMNIAPSFPPTAITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLIYLAAIADAQPPAPTVPPQMPIHHAMQQGHYMQHPQAAAAQQQPGMFGAKLPFQLSDQQQQQQHHLLHLQQQQPIQGLMGMRPIINNGMHQAMQTGLGALSGLMDVRGSKPDGSEVGSGDGQGKSASGHGSGNRDS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1281 198 PANTHER SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN 1 183 IPR044779 GO:0003713
Vvi16g1281 198 MobiDBLite consensus disorder prediction 182 198 - -
Vvi16g1281 198 MobiDBLite consensus disorder prediction 164 198 - -
Vvi16g1281 198 Pfam SSXT protein (N-terminal region) 19 72 IPR007726 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1281 Vvi-Chr16 21365418 21367855 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1281 - - vvi:100257141 357.451