Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1265 ATGGCGGCTCCTTTCCCTTCAGCTGCTCTGCAAACTGCTTCCTTCCATCGCCAGTATCCGCCCTCTCCATCTCCGTATTCTTCTTCCTTTTTAGCTTCATCCAAGTCTCTCCGCTCGCTGTCCAATCTCTCCTCATCTTCTGGCGGCTCCTCCATTCTCAAACTCAATGCAACCACTCGCCAGACCAAGCCACTGGCTGTTCGAATGTCCTGGGACGGTCCGCTCTCGTCGGTTAAACTGATCCTCCAGGGCAAAAATTTGGAGTTAACTGATACAGTTAGGAGCCATGTGGAAGAGAAAGTGGGGAAGGCAGTTCAGAAGCATAGCCATCTTGTGAGGGAAGTGGATGTTAGGTTGTCTATTCGAGGCGGAGAGCTTGGGAAAGGCCCCAAGATTCGGAGATGTGAGGTGACTTTGTTTACGAAGAAGCATGGAGTGGTTCGGGCCGAGGAACATGCTGAGACACTCTATGGGAGTATTGATATGGTGTCTTCTATTATACAGAGGAAATTGAGGAAGATTAAGGAGAAGGATTCAGACCATGGTCGACATATGAAGGGGTTCAACAGACTTAAAGTGAGGGATCCAGAGACTCCATTAGTGGAGGAGGAAGCTGATGTAGTTCCTCAAAAAGAGGATGGGGACCTAATCAATGAGATTGTTCGGACAAAATACTTTGACATGCCACCTTTGACTGTACCTGAAGCCGTTGAGCAGCTGGAAAATGTTGATCATGACTTCTTTGGTTTTCGAAATGAAGAAACTGGTGAGATTAATATTTTGTACAAAAGAAAAGCTGGTGGATATGGGCTTATTATTCCTAAAGAAAATGGCAAAACTGAGGAATTAGAGCCTGTGGTGGTAAAGTCAGATAGGGAACCTTCCTTGGCAGAATAG 897 0.4649 MAAPFPSAALQTASFHRQYPPSPSPYSSSFLASSKSLRSLSNLSSSSGGSSILKLNATTRQTKPLAVRMSWDGPLSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVREVDVRLSIRGGELGKGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKIKEKDSDHGRHMKGFNRLKVRDPETPLVEEEADVVPQKEDGDLINEIVRTKYFDMPPLTVPEAVEQLENVDHDFFGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKSDREPSLAE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1265 298 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 79 184 IPR036567 -
Vvi16g1265 298 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 218 271 IPR032528 -
Vvi16g1265 298 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 81 177 IPR003489 GO:0044238
Vvi16g1265 298 NCBIfam ribosome-associated translation inhibitor RaiA 79 182 IPR003489 GO:0044238
Vvi16g1265 298 PANTHER 30S RIBOSOMAL PROTEIN 65 284 - -
Vvi16g1265 298 CDD RaiA 79 177 IPR003489 GO:0044238
Vvi16g1265 298 Hamap Ribosome hibernation promoting factor [hpf]. 78 275 IPR034694 -
Vvi16g1265 298 FunFam ribosome-binding factor PSRP1, chloroplastic 230 281 - -
Vvi16g1265 298 Gene3D - 79 189 IPR036567 -
Vvi16g1265 298 Gene3D - 230 281 IPR038416 -
Vvi16g1265 298 FunFam Ribosome-binding factor PSRP1, chloroplastic 80 182 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1265 - - vvi:100853929 533.872