Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1264 ATGCAGACACATATTGGGGAAGTGTCACGCCCATACATATGCTTTGAGAGGATGGCTCATGGAGTGTTACTGGTGGGGCATAGTTCAACAGGCCATGATCCCATCCGGATGAAGGGTAGGCCTTACTGGATCGTAAAGAACTCATGGGATGAGAAGTGGGGAGAGAATGGATCCTACAAAAGCTACAGGAGACCGCACTCTTTGCATGGCCACCTAGGACATGCAGCCTTTGACCATGTTCCAAAAGTTTCCACTTTCTAA 261 0.4866 MQTHIGEVSRPYICFERMAHGVLLVGHSSTGHDPIRMKGRPYWIVKNSWDEKWGENGSYKSYRRPHSLHGHLGHAAFDHVPKVSTF* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1264 86 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 18 28 IPR025660 -
Vvi16g1264 86 Pfam Papain family cysteine protease 8 64 IPR000668 GO:0006508|GO:0008234
Vvi16g1264 86 SUPERFAMILY Cysteine proteinases 6 81 IPR038765 -
Vvi16g1264 86 Gene3D Cysteine proteinases. Chain C 11 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1264 Vvi-Chr16 21244425 21244816 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1264 K01373 - twl:120002275 98.2117