Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1260 ATGTCTAAAGTCGATTCAAAATCTCCCAAACACTGTGCCGACAAAGGATTGAACATTGACAAATTCTACAAGAAGCTATATTGGTCTGGCTTTACCTTTCTGTTCTCTGTTCTCTCACTCATCTTACTTGTCTGGCTTATCCTACATCCCACTAAGCCTGAGTTCAGCCTCAAAGAAGCCGATATCTATCAGCTCAACCTCTCAGGGCCTCATCTTCTCAACTCCTCTATCCAACTCACACTCCTCTCCAAGAATCCAAATACGAAGGTTGGCATTTACTATGACATGGTACAAGTTTATGCCTCTTACAAGGGCCAACAGATAACTGTTGACACCTCTCTTCCTCCCTTCTATCAAGGTCATGAAGAAAGCAATCTCTTGACGGCGTCCTTGGTTGGAACTGCCCTACCGGTGGCTCCATCTTTTGGTTATGAAGTTGGACGTGATCAGACGGCAGGAAAACTTGTTCTGAGTTTAAAGCTCGATGGCCGGGTTCGATGGAAGGTGGGGACTTGGGTTTCTGGCCGATACCGACTTAACGTTAATTGTGTTGCTGTGATGGCATTTGGACCCTCCATCCCATCTGGTCCACTGAGTTCAAAAGAAGGAACTCAGTGCTCTACTACTGTTTGA 633 0.4566 MSKVDSKSPKHCADKGLNIDKFYKKLYWSGFTFLFSVLSLILLVWLILHPTKPEFSLKEADIYQLNLSGPHLLNSSIQLTLLSKNPNTKVGIYYDMVQVYASYKGQQITVDTSLPPFYQGHEESNLLTASLVGTALPVAPSFGYEVGRDQTAGKLVLSLKLDGRVRWKVGTWVSGRYRLNVNCVAVMAFGPSIPSGPLSSKEGTQCSTTV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1260 210 Pfam Late embryogenesis abundant protein 80 183 IPR004864 -
Vvi16g1260 210 PANTHER OS05G0367900 PROTEIN 25 197 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1260 Vvi-Chr16 21228286 21228918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1260 45 183 EF-hand Containing Proteins AT5G21130 22.857 1.22e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1260 - - vvi:100233032 403.675