Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1258 ATGGAGAGATCAAGCCAAGAATCCCACCTGAGATCTGAAAACTGCGTCACATACGAGTCCCCGTACCCACTTTACTCCATGGCAATCTCTTCTTCAACCCAGCACCACCACCCCCGCATCGCCATTGGCAGCTTCATCGAAGAACTCAGCAACAGGGTCGACATCGTCTCCTTCGACGAAGACGCCCTAGCAATCAGGACCCACCCCAGCCTCTCCTTCGACCACCCTTACCCACCCACCAAGCTCATGTTCCACCCCAACTCCCGCACATCCCCGGATCACCTCGCCTCCTCCGGCGAATACCTCCGTCTCTGGGAAGTTCGCGACAATTCGATTCAACCCCTCTCGGTTCTCAACAACAGCAAAACCAGCGAGTTCTGCGCCCCATTAACATCCTTCGATTGGAACGAGGTCGAGCCTCGGAGAATTGGGACATCCAGCATCGACACCACTTGTACCATCTGGGACGTGGAGAGGGGTGTTGTTGAAACCCAGCTGATTGCCCACGATAAGGAGGTGTACGACATTGCTTGGGGTGAAGCAGGGGTTTTCGCCTCGGTTTCCGCTGATGGGTCAGTGAGAATTTTCGATTTGAGGGATAAGGAGCACTCTACAATCATATACGAGAGCCCCCAGCCTGATACTCCATTGCTTAGATTGGCCTGGAACAAGCAGGATGTGAGGTACATGGCTACCATTCTGATGGATAGTAATAAGATCGTCATATTGGATATAAGGTCGCCAACAATGCCGGTTGCGGAGTTGGAGAGGCATCGGGCTAGTGTCAATGCCATTTCTTGGGCTCCCCAGAGTTCCCGTCATATTTGTTCAGGAGGGGATGATTCACAGGCACTCATTTGGGAGTTGCCTACGCTTGCTGGACCCAATGGAATCGATCCAATGTCAGTATACTTGGCTTCGTCTGAAATTAACCAGCTGCAGTGGTCTGCAGCTCAGCCAGAGTGGATTGCCATTGCCTTCTCCAACAAACTGCAGCTTCTTAAAGTTTAG 1011 0.5232 MERSSQESHLRSENCVTYESPYPLYSMAISSSTQHHHPRIAIGSFIEELSNRVDIVSFDEDALAIRTHPSLSFDHPYPPTKLMFHPNSRTSPDHLASSGEYLRLWEVRDNSIQPLSVLNNSKTSEFCAPLTSFDWNEVEPRRIGTSSIDTTCTIWDVERGVVETQLIAHDKEVYDIAWGEAGVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDVRYMATILMDSNKIVILDIRSPTMPVAELERHRASVNAISWAPQSSRHICSGGDDSQALIWELPTLAGPNGIDPMSVYLASSEINQLQWSAAQPEWIAIAFSNKLQLLKV* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1258 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 289 IPR001680 GO:0005515
Vvi16g1258 336 Pfam WD domain, G-beta repeat 252 287 IPR001680 GO:0005515
Vvi16g1258 336 Pfam WD domain, G-beta repeat 166 197 IPR001680 GO:0005515
Vvi16g1258 336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 289 - -
Vvi16g1258 336 SMART WD40_4 66 106 IPR001680 GO:0005515
Vvi16g1258 336 SMART WD40_4 159 197 IPR001680 GO:0005515
Vvi16g1258 336 SMART WD40_4 111 156 IPR001680 GO:0005515
Vvi16g1258 336 SMART WD40_4 248 288 IPR001680 GO:0005515
Vvi16g1258 336 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Vvi16g1258 336 Gene3D - 24 335 IPR015943 GO:0005515
Vvi16g1258 336 FunFam WD repeat-containing protein LWD1 11 335 - -
Vvi16g1258 336 SUPERFAMILY WD40 repeat-like 23 293 IPR036322 GO:0005515
Vvi16g1258 336 PANTHER WD REPEAT CONTAINING PROTEIN 5 336 IPR045159 -
Vvi16g1258 336 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 206 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1258 Vvi-Chr16 21201381 21202391 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1258 K11805 - vvi:100248734 683.33