Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1254 ATGCCAGAAGCCGAGGCTGAGCAAGTTGCCTCTCTCGAAGAGGATCTCCAGAAGAAGAAGCTTCTCGAAGAGGAGCCCGTGGTTGAAGACGTCAAGGACGAGGAAGAGGACGACGATGACGACGAGGACGACGAGGACGACGAGAAGGAAGATGGGGCCCAAGGTGCAAATGAGGGCTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGCAAGGCAATGTTGAAGCTCGGCATGAAACCCGTTACTGGTGTTGGAAGGGTCACCATTAAGAGAACAAAAAATATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTATGTCATATTTGGGGAGGCGAAGATAGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCACAACAGTTCAGGATGCCAGATATGGGGTCGGTGATGGCAAAATCAGACATTTCTGCTGCAGCTGCTGGAACACAAGCAGATGAGGAAGAGGAAGTGATTGATGAGACTGGGGTGGAGCCTCGAGACATTGATTTGGTGATGACTCAAGCTGGGGTGTCAAGGAGCAAGGCTGTTAAGGCTCTCAAGACTCACAATGGGGACATTGTCAGTGCTATCATGGAGCTCACCACCTAG 633 0.5008 MPEAEAEQVASLEEDLQKKKLLEEEPVVEDVKDEEEDDDDDEDDEDDEKEDGAQGANEGSKQSRSEKKSRKAMLKLGMKPVTGVGRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMGSVMAKSDISAAAAGTQADEEEEVIDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1254 210 ProSiteProfiles NAC A/B domain profile. 63 128 IPR002715 -
Vvi16g1254 210 CDD NAC_NACA 77 124 - -
Vvi16g1254 210 Pfam HYPK UBA domain 170 209 IPR044034 -
Vvi16g1254 210 SMART NAC_2 66 122 IPR002715 -
Vvi16g1254 210 MobiDBLite consensus disorder prediction 1 73 - -
Vvi16g1254 210 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 14 209 IPR016641 GO:0005854
Vvi16g1254 210 FunFam Nascent polypeptide-associated complex (NAC), alpha subunit 73 125 - -
Vvi16g1254 210 Gene3D - 72 125 IPR038187 -
Vvi16g1254 210 CDD UBA_NAC_euk 173 209 - -
Vvi16g1254 210 MobiDBLite consensus disorder prediction 28 52 - -
Vvi16g1254 210 Gene3D - 171 208 - -
Vvi16g1254 210 MobiDBLite consensus disorder prediction 11 27 - -
Vvi16g1254 210 Pfam NAC domain 66 121 IPR002715 -
Vvi16g1254 210 FunFam Putative nascent polypeptide-associated complex subunit alpha 171 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1254 Vvi-Chr16 21156433 21158249 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1254 K03626 - vvi:100854239 307.375