Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1251 ATGGCGAACCTGCAAATTGTTCCAGCTTCCAACAACGTGGAAGCACAGTACGTGGAGATGATGGTGCCTCTGTACTCATATGGATGTGAGAAGAAAGTAAAGAAGACATTAGCCGGAATTAAAGGGATATACTCAGTGAATGTGGATTATAATCAGCAGAAGGTGACAGTGTGGGGAATATGCAACAAATATGATGTGCTAACGACCATGAGGACCAAGAGGAAAGAAGCCCGGTTCTGGAATGATGAAGACAACGCGGAGATGGAAGAACCCGTGAAAGATCCCAAGCCTATGACTTTAACTAGAATGATAATGGTGGCTGTGATTACAGAGCTGCTAGAGGAATACACCGTGGTGCTGGCAAGGATGACAGAGCAGCTGTTCCTCCCAAGGCATAATATGGGTGCCCTCAATATCAGGAATCTCCGTCTCTCCAGTCCCTCTTCCCTTCAAGACAACTCTTCCTTCCTTCTCTACTTCTAG 483 0.4617 MANLQIVPASNNVEAQYVEMMVPLYSYGCEKKVKKTLAGIKGIYSVNVDYNQQKVTVWGICNKYDVLTTMRTKRKEARFWNDEDNAEMEEPVKDPKPMTLTRMIMVAVITELLEEYTVVLARMTEQLFLPRHNMGALNIRNLRLSSPSSLQDNSSFLLYF* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1251 160 CDD HMA 19 59 IPR006121 GO:0046872
Vvi16g1251 160 Gene3D - 11 87 - -
Vvi16g1251 160 ProSiteProfiles Heavy-metal-associated domain profile. 15 82 IPR006121 GO:0046872
Vvi16g1251 160 SUPERFAMILY HMA, heavy metal-associated domain 16 81 IPR036163 GO:0046872
Vvi16g1251 160 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 18 86 IPR045181 GO:0046872
Vvi16g1251 160 Pfam Heavy-metal-associated domain 22 57 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1251 Vvi-Chr16 21140127 21142455 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1251 - - vvi:100853393 213.386