Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1250 ATGGGTGAAGAAGCTAAGGAACAAGCTCCAGCTGAAGTTAAACCAGAGGCAGAGGAGAAGAAGGAGGAAAAAGCAGAGGAGAAGAAAGAAGAAAAACCAGAAGAGCCGAAGGAGGAACCTAAGCCACCATTACCATTTGTCTTGTTTGTAGATTTGCATTGTGTGGGATGTGCCAAGAAGATAGAGAGGTCCCTCATGAAAATAAGAGGAGTCGAGGAGGTTATGATTGATATGGCTCAAAACCAGGTGACTATAAAGGGAATAGTTGAACCACAAGCTGTGTGCAATAGGATAATGAAGAAAACCAAGAGAAGAGCTAAAGTCTTATCCCCTCTGCCTGAAGCTGAGGGAGAGCCCATGCCAGAAGTTGTTAGTTCACAGGTTAGTGGATTAACAACTGTGGAACTCAATGTGAACATGCACTGTGAGGCCTGTGCTGCCCAACTCAAGAGAAAGATACTAAAAATGAGAGGAGTACAGACGGCGGAGACGGAGCTGAGTACCAGTAAAGTCACAGTTACTGGCACCATGGATGCAGACAGGCTTGTTGATTATGTATACAGACGCACCAAAAAACAAGCACGTATTGTTCCACAGCCTGAACCTGAGAAGCAGGAGGAAAACAAAGAGGGTGAGAAGCCAGCTGAAGAAACAAAGCCTGAAGAAAAGAAAGAGGAAAATGCAGAGAAAGCAGAGGAGGGCAAACCACCAGAAGAAGCAAAGAAAGGTGAGGAAGGCAATGGTGGTGAAAATAATGAGAGCAAAGAAGAGAAGGGTGGTGAAAACAAGGAAGAGGGTAAAGTTGGAGAGATCCCCATGGATGATGAAACAATGAAGAGGATGATGTACTACTATCAACCGCTCTATGTCATTGAGCGAATGCCACCTCCCCAACTCTTCAGTGATGAGAACCCCAATGCCTGTTGCATCTCATAA 936 0.4509 MGEEAKEQAPAEVKPEAEEKKEEKAEEKKEEKPEEPKEEPKPPLPFVLFVDLHCVGCAKKIERSLMKIRGVEEVMIDMAQNQVTIKGIVEPQAVCNRIMKKTKRRAKVLSPLPEAEGEPMPEVVSSQVSGLTTVELNVNMHCEACAAQLKRKILKMRGVQTAETELSTSKVTVTGTMDADRLVDYVYRRTKKQARIVPQPEPEKQEENKEGEKPAEETKPEEKKEENAEKAEEGKPPEEAKKGEEGNGGENNESKEEKGGENKEEGKVGEIPMDDETMKRMMYYYQPLYVIERMPPPQLFSDENPNACCIS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1250 311 Gene3D - 45 107 - -
Vvi16g1250 311 Gene3D - 129 196 - -
Vvi16g1250 311 ProSiteProfiles Heavy-metal-associated domain profile. 43 106 IPR006121 GO:0046872
Vvi16g1250 311 ProSiteProfiles Heavy-metal-associated domain profile. 131 195 IPR006121 GO:0046872
Vvi16g1250 311 MobiDBLite consensus disorder prediction 1 42 - -
Vvi16g1250 311 SUPERFAMILY HMA, heavy metal-associated domain 47 100 IPR036163 GO:0046872
Vvi16g1250 311 Pfam Heavy-metal-associated domain 48 91 IPR006121 GO:0046872
Vvi16g1250 311 Pfam Heavy-metal-associated domain 137 180 IPR006121 GO:0046872
Vvi16g1250 311 SUPERFAMILY HMA, heavy metal-associated domain 128 192 IPR036163 GO:0046872
Vvi16g1250 311 CDD HMA 135 175 IPR006121 GO:0046872
Vvi16g1250 311 CDD HMA 52 107 IPR006121 GO:0046872
Vvi16g1250 311 MobiDBLite consensus disorder prediction 1 41 - -
Vvi16g1250 311 MobiDBLite consensus disorder prediction 193 273 - -
Vvi16g1250 311 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 1 311 IPR044258 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1250 Vvi-Chr16 21131306 21132993 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1250 - - vvi:100241862 395.971