Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1249 ATGCTTCGGTTAGGAAGGAGTTGGCCTTCAAAGAGGAGGGTTTTTGGGACTCCCAGGGAGGAGCCAAGAAAGGCAGAGTGGTTAGTCTCAATAAGGAGGAAAATCCATGAAAACCCAGAGCTCAAATTCGAAGAATACAATACCAGTGCTCTTATTCGTGGAGAACTCGACAAACTGGGCATCTCCTACACACACCCACTTGCCAAGACTGGCATTGTAGCAGAAATTGGCACTGGGTCTGGCCCAGTTGTGGCTCTTCGAGCTGACATGGATGCTCTCCCTCTGCAGGAGCTTGTTGAGTGGGAGCATAAGAGCAAGATTGATGGGAAAATGCATGGGTGCGGCCACGATGCCCACACCACTATGCTGCTCGGTGCTGCCAAGTTGCTTAATAAAAGGAAGCATAAACTTAAGGGAACTGTGAGATTTCTTTTCCAGCCAGCTGAGGAGGGAGGTTTGGGCGCTCTTGAAATGATCAAGGAAGGTGCTCTTGGCAGGATCGCGTCTCGTTCAGGGCCTCTCCTGGCTGCAGTGTGCACCTTTGAAGCAAGAATAGAAGGGAAAGGTGGGGATGCTGCAGAACCCCACACTAATGTGGATCCAATACTTGCAGCATCATTATCAATTTTGGCATTGCAACAGCTCATCTCAAGGGAATTAGATCTCCTGGACTGCCAAGTACTGTCTGTTACTTCTGTCAAAGGAGGGACAACACTGAATCTAACTCCATCATATGTTGTGCTTGGAGGAAGCTTAAGGAGTCATACCACGGAAGGCTTGAAACAACTCCAGAAGAGAGTCAAAGAGGTTATTGAAGGGCAGGCAGCTGTACACCGATGTAATGCGTATTTTTACAGAACAGAAGAAGATTACCTTCTTCCAGCGGTTGTTAACGACGAGGTCATGCATCAGCATGTGGTGAGGGTTGGGAAACTCCTGCTTGGTCCTGAGAATACCCAGGTAGCTAACAAGGTGATGGCAAGTGAGGACTTTGCCTTCTACCAAGAAGTGATCCCTGGAGTTATGTTTGGCATTGGAGTTAGAAATGAGCAAGTGGGTTCTGTTCACCCCCTTCACTCCTCTCACTTCTTTCTTGATGAGGCTGTCCTTCCAATTAGGGCAGCACTTCACACTGCTATAGCTGAGATGTATCTGGATGAGCACCAAAATCCCATTCTACCTTAA 1185 0.481 MLRLGRSWPSKRRVFGTPREEPRKAEWLVSIRRKIHENPELKFEEYNTSALIRGELDKLGISYTHPLAKTGIVAEIGTGSGPVVALRADMDALPLQELVEWEHKSKIDGKMHGCGHDAHTTMLLGAAKLLNKRKHKLKGTVRFLFQPAEEGGLGALEMIKEGALGRIASRSGPLLAAVCTFEARIEGKGGDAAEPHTNVDPILAASLSILALQQLISRELDLLDCQVLSVTSVKGGTTLNLTPSYVVLGGSLRSHTTEGLKQLQKRVKEVIEGQAAVHRCNAYFYRTEEDYLLPAVVNDEVMHQHVVRVGKLLLGPENTQVANKVMASEDFAFYQEVIPGVMFGIGVRNEQVGSVHPLHSSHFFLDEAVLPIRAALHTAIAEMYLDEHQNPILP* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1249 394 Pfam Peptidase family M20/M25/M40 85 368 IPR002933 GO:0016787
Vvi16g1249 394 CDD M20_IAA_Hyd 28 385 IPR044757 GO:0009850|GO:0016787
Vvi16g1249 394 PANTHER PEPTIDASE M20 FAMILY MEMBER 20 391 IPR017439 GO:0016787
Vvi16g1249 394 PIRSF Amidohydrol_AmhX 17 389 IPR017439 GO:0016787
Vvi16g1249 394 SUPERFAMILY Zn-dependent exopeptidases 25 385 - -
Vvi16g1249 394 NCBIfam amidohydrolase 28 164 IPR017439 GO:0016787
Vvi16g1249 394 FunFam N-acetyldiaminopimelate deacetylase 176 293 - -
Vvi16g1249 394 Gene3D Zn peptidases 28 370 - -
Vvi16g1249 394 Gene3D - 176 293 - -
Vvi16g1249 394 SUPERFAMILY Bacterial exopeptidase dimerisation domain 179 282 IPR036264 -
Vvi16g1249 394 Pfam Peptidase dimerisation domain 178 275 IPR011650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1249 Vvi-Chr16 21120452 21126501 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1249 K14664 - vvi:100246990 635.565