Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1225 ATGGCATGGTTTAGCGGGAAGGTCTCTTTAGGAGGCTTTCCAGATCTGGCTGGGGCCGTGAATAAGCTCAGCGAGAGTGTGAAGAATATTGAAAAGAATTTTGATAGTGCTCTTGGATTTGAAGAAAAGTCTGATCCAGGTGGAGAAGTATCATCAGGATTATGGCCTTCAGCCATAGCATTTATGGGGCAAAAAGGTTCAGAAGGTACTACTGAATCTTCAGAACAACCTGAATCTTCAGAACAACCTGAATCTTCAGAACGACCTGAATCTTCAGAACGACCTGAATCTTCAGAACAACCTGAATCTTCAGAACAACCTGAATCTTCACAGCTTCCGTCTTCAGCTGGAGAAAAACAAGAGGTGGAGACTGTTGGGTCCACCCATTCTCCTGCTGAAGAAGCTGCACCGGCCAAAGAAGGGAGAGAACCAGTCCAAATAGAAAAGGATCATGTGCATCCAGGCATCTCGGAGGAGGGAACAGATATTGTAATTGCAGACTCCAGAAAGAATGAGTCTGATTCACAATTGGTGTTGGCTGCTCCATCTGAATCCACTGTTGAGAGTGTCGAGTCAATGGATTCCTCTAATTACATCCAACAGGAAGCTAGTTCACACTCTGTGGAAGCCAACTCCCAAGCCGATGAAATTGATCAAGTTGAGGGTAGCATAATTATACCAGATGAATCCCATAAGGTCGCTGATTTGCATGAGAGCACAGGTGAGCAGAAGACAGGGGTGAATGAGATTGTGGATAAAATTTTACCCATTCAAACTGAAGCATCAATTGATAGCAAGGCTGGGATTGGGACTGAGCTCTCTGCTTCACATTCTGCTACTATTAAGGAAACTGAAAGTGCTGGTGAACTCTCTGAGGATCACTTACCTACTACACTTCCTTCATATGTGGCTTCAGAAACAGTTTCTGAGTTGGTTTCTCATGAAAATGATGTAATTGCTAAAGCAGTTGATCCGCAAGCCCATGATTACAACACTGACGTTAAGGAATCAGCATTTGGCTCAGGAACCAATGTGTCTGACTCTGTGGATTCTGCTGTTGAAGTTGAGAAGTTGAAGTTGGAGATGAAGATGCTGGAAACTGCACTCCAGGGGGCTGCAAGACAAGCTCAGGCAAAAGCTGATGAAATTGCAAAGCTGATGAATGAAAATGAGCAGCTAAAAATTGTAAATGAGGATTTGAAGAGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAGGTATATGCCCTTACTAAGGAAAGGGATACACTACGAAGAGAACATAGCAGAAAAAGTGATGCTGCTGCCCTTTTGAAAGAAAAAGATGAAATAATCAACCAAGTTATGGCTGAGGGTGAAGAGCTTTCAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAGATTAGAGAGTTTGAAGAAGAGAAGAAAGGATTGACAACCAAACTACAGGTGGAAGAGAATAAGGTGGAGAGTATTAAGAGGGACAAGGCAGCAACTGAGAAATTGCTGCAAGAAACAATTGAAAAACACCAGGCAGAGCTTGCAGCTCAAAAAGAATACTATACTAATGCTTTGACTGCAGCCAAGGAAGCTGAAGCATTAGCTGAGGCACGGGCTAACAGTGAAGCCAGAACTGAACTAGAAATTCGTCTAAGAGAAGCTGAGGAACGTGAAGCCATGCTGGTTCAGGCCCTTGAAGAACTAAGGCAAACGCTAAGTAGAACAGAGCAGCAGGCTGTGTTTAGAGAGGACAGGTTCCGCAGAGACATTGAGGATCTTCAAAAGCGTTATCAAGCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAGGAGACAACAGCCAGAAGAGCAGAAGCTTGGGCTGCTGTTGAGAGATCTCTGAACTCTCGACTACAGGAGGCGGAGGCTAAAGCTGCAACTGCTGAGGAAAAAGAGAGATCTGTAAATGAACGCTTGTCGCAAACCTTATCTAGAGTAAATGTCCTTGAAGCACAGATTTCATGTCTTAGAGCAGAACAGACACAGCTGAGTAGGTCTCTAGAAAAGGAGAGACAGAGAGCAGCTGAAAATAGGCAGGAGTATCTAGCGGCAAAAGAGGAAGCTGACACTCATGAAGGCCGTGCAAACCAGCTAGAAGAAGAAATCAGGGAACTCAGGAAGAAACACAAGCAAGAGTTACAAGATGCGCTGGCACACAGGGAACTCTTGCAGCAGGAACTTGAACGGGAGAAAAATACACGTTTGGATTTGGAAAGGACAGCTCGTCTTCAGTCTTCTGCTGTATCCAATCAAACTCCAAACAAAAAGCAGAGTTCTGGTTTTGAAAATGGAAACTTGACTCGCAAACTTTCAAGTGCTAGCAGTGTAGGCAGCATGGAGGAAAGCTATTTTCTGCAAGCCTCTTTAGACCCATCTGACAGTTTATCTGAACGGAGAAACCTTGGAGAGGCAACCATGAGTCCATACTATATGAAGAGCATGACACCTAGTGCTTTTGAAGCTGCCATCCGTCAGAAGGAGGGTGAACTTGCCTCATACATGTCTCGTTTGGCATCCATGGAAGCCATCCGTGACTCTCTTGCTGAGGAGTTAGTTCAAATGACAGAGCAGTGTGAGAAATTGAGGGCAGAAGCTGCCTTTCTGCCTGGCATCCGGGCAGAGCTAGAAGCACTAAGACGGAGGCATTCTTCTGCATTAGAGCTAATGGGTGAACGTGATGAGGAGCTGGAAGAACTCCGTGCTGATATTGTGGACTTGAAAGAAATGTATAGAGAGCAGATAAACCTGCTTGTGAATCAGGTCTAA 2907 0.4462 MAWFSGKVSLGGFPDLAGAVNKLSESVKNIEKNFDSALGFEEKSDPGGEVSSGLWPSAIAFMGQKGSEGTTESSEQPESSEQPESSERPESSERPESSEQPESSEQPESSQLPSSAGEKQEVETVGSTHSPAEEAAPAKEGREPVQIEKDHVHPGISEEGTDIVIADSRKNESDSQLVLAAPSESTVESVESMDSSNYIQQEASSHSVEANSQADEIDQVEGSIIIPDESHKVADLHESTGEQKTGVNEIVDKILPIQTEASIDSKAGIGTELSASHSATIKETESAGELSEDHLPTTLPSYVASETVSELVSHENDVIAKAVDPQAHDYNTDVKESAFGSGTNVSDSVDSAVEVEKLKLEMKMLETALQGAARQAQAKADEIAKLMNENEQLKIVNEDLKRKSNEAETESLREEYHQRVAALERKVYALTKERDTLRREHSRKSDAAALLKEKDEIINQVMAEGEELSKKQAAQESQIRKLRAQIREFEEEKKGLTTKLQVEENKVESIKRDKAATEKLLQETIEKHQAELAAQKEYYTNALTAAKEAEALAEARANSEARTELEIRLREAEEREAMLVQALEELRQTLSRTEQQAVFREDRFRRDIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETTARRAEAWAAVERSLNSRLQEAEAKAATAEEKERSVNERLSQTLSRVNVLEAQISCLRAEQTQLSRSLEKERQRAAENRQEYLAAKEEADTHEGRANQLEEEIRELRKKHKQELQDALAHRELLQQELEREKNTRLDLERTARLQSSAVSNQTPNKKQSSGFENGNLTRKLSSASSVGSMEESYFLQASLDPSDSLSERRNLGEATMSPYYMKSMTPSAFEAAIRQKEGELASYMSRLASMEAIRDSLAEELVQMTEQCEKLRAEAAFLPGIRAELEALRRRHSSALELMGERDEELEELRADIVDLKEMYREQINLLVNQV* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1225 968 MobiDBLite consensus disorder prediction 786 813 - -
Vvi16g1225 968 MobiDBLite consensus disorder prediction 135 169 - -
Vvi16g1225 968 Coils Coil 884 911 - -
Vvi16g1225 968 MobiDBLite consensus disorder prediction 780 813 - -
Vvi16g1225 968 Coils Coil 555 628 - -
Vvi16g1225 968 Coils Coil 658 787 - -
Vvi16g1225 968 MobiDBLite consensus disorder prediction 39 215 - -
Vvi16g1225 968 MobiDBLite consensus disorder prediction 81 101 - -
Vvi16g1225 968 MobiDBLite consensus disorder prediction 711 742 - -
Vvi16g1225 968 Coils Coil 355 440 - -
Vvi16g1225 968 Coils Coil 465 527 - -
Vvi16g1225 968 Coils Coil 936 963 - -
Vvi16g1225 968 Pfam TATA element modulatory factor 1 TATA binding 859 963 IPR022091 -
Vvi16g1225 968 MobiDBLite consensus disorder prediction 64 80 - -
Vvi16g1225 968 MobiDBLite consensus disorder prediction 170 215 - -
Vvi16g1225 968 MobiDBLite consensus disorder prediction 102 127 - -
Vvi16g1225 968 PANTHER GOLGIN CANDIDATE 5 1 968 - -
Vvi16g1225 968 Pfam TATA element modulatory factor 1 DNA binding 446 517 IPR022092 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1225 Vvi-Chr16 20956972 20981363 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1225 K20286 - vvi:100250341 1661.74