Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1222 ATGGCTCCTGAATTGGAAGATTTCGACCTCACAGGACCGAAACAGCTCGCTGTTGTTGACTGGAGAAATAATCATCACTGCCGGGCAGTTGCTGCCAGCCTGGTTCAGGGAGCATACAATTCAGAACATAATCGCCAGAAATCCCAAGATCCCAAAGTTCAGAGTTCCCGTTGGTGGTGCTCCTTTCATTTTGAGGTAAAACGTGTGCTCATAGATGATAAAGATTCATCCATCTACGGTGTCGTTTATGAATTCAAGCACACAAACCCTAACAGTTTGCCAGAATGCGCCCCAAAGTGTGTGATTGCCTTTCGTGGAACAATCCTCAAATCTAGCTCCGCAAAACAGGATATGAAGTTGAATATCAAGCTCTTGACTGCTGAACTTCGCAAGGACAACTCTCGCTTTAAACCCGCGCTGGCCGCTGTCAAAGAAGTTGTTCAAGAAGCTGAGCCTGCAAATATTTGGTTAGCAGGACATTCCCTGGGGTCGGCCATTGCAATGCTGGTTGGAAAATCCATGGCCCAGGAGGAGGGAAAGTATCTCAAAACTTTCCTTTTCAATCCGCCTTTCTTGAGGTCTTCCCTCTCAATGAATATCAACAGTCCACGTTTGGAGAATGTAATCTGCTCAACAAAGAATGTTATCAAAGCTGGGATCTCTTTTGTTGGGGGTGATCATTTGTGGCAGGAACGACATCACCAATTTAATAAATTGTCTCCTTGGATCCCCTACCTGTTTGTGAACAAAGACGATCCTATTTGCTCAGGGTATATAGACCATTTTGGAAATAGGAAGATCGAATCTGAGATATGTTCAATAAGGAGTGCATTAAGAGCTGCAGTTGGGATAGATCCACAACTACCCGTACATCTACTTCCTAAAGCATATCTAACTATTAGCGAGAACTCATCCTCATGCGATGTTTTGGAAGCTCATGGACTAAAACAATGGTGGTACCAAATGTCTATAGGGCCGGGCTTTGCAAATTCACCAATGAAGGTATCGATAGGTGATACCAAACTCGTGGGTGAACCCTGA 1041 0.4448 MAPELEDFDLTGPKQLAVVDWRNNHHCRAVAASLVQGAYNSEHNRQKSQDPKVQSSRWWCSFHFEVKRVLIDDKDSSIYGVVYEFKHTNPNSLPECAPKCVIAFRGTILKSSSAKQDMKLNIKLLTAELRKDNSRFKPALAAVKEVVQEAEPANIWLAGHSLGSAIAMLVGKSMAQEEGKYLKTFLFNPPFLRSSLSMNINSPRLENVICSTKNVIKAGISFVGGDHLWQERHHQFNKLSPWIPYLFVNKDDPICSGYIDHFGNRKIESEICSIRSALRAAVGIDPQLPVHLLPKAYLTISENSSSCDVLEAHGLKQWWYQMSIGPGFANSPMKVSIGDTKLVGEP* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1222 346 Gene3D alpha/beta hydrolase 28 279 IPR029058 -
Vvi16g1222 346 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 6 321 - -
Vvi16g1222 346 Pfam Lipase (class 3) 137 178 IPR002921 GO:0006629
Vvi16g1222 346 SUPERFAMILY alpha/beta-Hydrolases 17 270 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1222 Vvi-Chr16 20913207 20914643 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1222 8 319 Acyl Lipid Metabolism Gene Families AT5G24220 38.906 2.62e-66 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1222 - - vvi:100854885 711.449