Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1220 ATGGCTATTGAAAGGGGAAATTTCGACCTCACAGGACCGAAACAACTCACTGAAGTTGACTGGACAAATAATCATCACCGTCGGGCAGTTGTTGCGAGCCTGGTTGAGGGAGCATACAATTTAGAATATGATCGCCAGGAATCCCGAGATCCCCAAGTTCAGTCTTCCCGTTGGTGGAACTTCTTTCATTTTCAGTTAAAACGTGCGCTCGTAGATGATAAAGATTCATCCATCTACGGTGCTGTTTATGAAATCAAGCACACATACCTTAACCATTTGCCAAAATGTGCCCCAAAGTATGTTATCGCCTTTCGTGGCACAATCCTCAAACTGAGCACCGCAAAACGAGATCTCAAGTTGAATATCAAGGTCTTGACTGATGTACTTCACATGGACAGACACCGCTTTAAACCAGCACTGGAAGCTGTCCAACAAGTTGTTCAAGAAGCCGGGTCTGCAAATATTTGGTTAGCAGGACATTCCCTTGGGTCATCCATTGCGATGATGGTTGGAAAATCCATGGCCCAGGAGGGTAAATGTATGGAAGCTTTCCTTTTCAATCCACCTCTCTTGGGGAATGTCCTCTTGAAGATTATCGGCAATCAATATTTGCAGGATGCAATGCGCTTGACGGAGACTTTGTGTAATTTTGGGACATTATTTGTTGGAGGTGGTCATGTGAGGCAGGGACTGTTGAATTTTGACTTAGTATTTGCTGGAATTTGA 726 0.4421 MAIERGNFDLTGPKQLTEVDWTNNHHRRAVVASLVEGAYNLEYDRQESRDPQVQSSRWWNFFHFQLKRALVDDKDSSIYGAVYEIKHTYLNHLPKCAPKYVIAFRGTILKLSTAKRDLKLNIKVLTDVLHMDRHRFKPALEAVQQVVQEAGSANIWLAGHSLGSSIAMMVGKSMAQEGKCMEAFLFNPPLLGNVLLKIIGNQYLQDAMRLTETLCNFGTLFVGGGHVRQGLLNFDLVFAGI* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1220 241 Pfam Lipase (class 3) 138 209 IPR002921 GO:0006629
Vvi16g1220 241 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 7 216 - -
Vvi16g1220 241 Gene3D alpha/beta hydrolase 30 212 IPR029058 -
Vvi16g1220 241 SUPERFAMILY alpha/beta-Hydrolases 20 203 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1220 Vvi-Chr16 20899643 20900760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1220 1 218 Acyl Lipid Metabolism Gene Families AT2G05260 39.269 6.08e-54 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1220 - - vri:117934053 468.003