Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1175 ATGGTGATAGTTGCACTATGGTGTGTACAAATGAAGCCTGTGGATCGTCCTTCAATGAGCAAAACATTGGAGATGCTTGAAGGAGAGATTGAACTATTGAAAATGCCTCCTAAGCCAACTCTATGGTCTATCGAGAATCATGAGCAATCCATGGTAGAGGTACCAATTTCATCATCCAATTCCATGGGTACAATCAGCTTAAATGGAAGGTAG 213 0.4131 MVIVALWCVQMKPVDRPSMSKTLEMLEGEIELLKMPPKPTLWSIENHEQSMVEVPISSSNSMGTISLNGR* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1175 70 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 48 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1175 Vvi-Chr16 20417691 20417903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1175 1 45 Receptor kinase-like Gene Family AT5G38280 60.000 5.52e-14 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1175 - - vvi:100853180 143.28