Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1148 ATGGTGGGAAAAAGGAAGCATGCAAATACATGTCTAGAGCAAAGCCAAACATACTTCCCGTCATGGATTTATGATCGAATAGATCAAGGAGAAGACATGGAAATTGGAGATGCCACTGAGGACGAACACAAGTATATAAGAAAGATAGTCATAGTTGCATTATGGTGTGTACAGATGAATCCCACGGATCGTCCTTCAATGAGCAAGGCATTGGAGATGCTAGAAGGTGAAGTTGAACTCCTGCAAATGCCCCCCAGGCCTACTCTATACTCCAGGGAGATGTCAGTTGAGGATCATATGAACAATCCAGTTGGGGTACCAATTTCTTCACGAAATGCGACAATGATGATCAGCTTGGAGGGAAGGTAG 369 0.439 MVGKRKHANTCLEQSQTYFPSWIYDRIDQGEDMEIGDATEDEHKYIRKIVIVALWCVQMNPTDRPSMSKALEMLEGEVELLQMPPRPTLYSREMSVEDHMNNPVGVPISSRNATMMISLEGR* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1148 122 SUPERFAMILY Protein kinase-like (PK-like) 40 104 IPR011009 -
Vvi16g1148 122 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
Vvi16g1148 122 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 95 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1148 Vvi-Chr16 20034565 20034933 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1148 18 102 Receptor kinase-like Gene Family AT5G38280 51.724 9.11e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1148 - - vvi:100854552 250.366