Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1129 ATGTTAAGGGAGGCACAACTCGTGGGAGTAGGCCTCATGACAGTAGTCATCCATGCCTGCTTCCTTTCAGTTTGTGTTGCTAAGCATCACAAGTACCAGATATGCAGCCCCTCTTCCTGCGGAGATATGAGGAACATTTCCTACCCTTTTCGATTACAAGACGATCCCCCCAGCTGCGGTTACCCTGAGTATGAATTGATTTGTGAAAACGATCGTACTATGATAAACCTTCACGGTGGGAAATACTTAGTTACCCAGATCAACTACCAGAATTATACAATTCGGGTAGTGGATCCTGGGCGAAAGAAGGACAACTGTTGGATCTCCAGTCCTCTTAATTCCATTGGTGCATATTACTCTGATTATGAATATCCATATTATTTGCCTTATTATGAATCTCCATATCATTTGCCTTCTGAATGGAGTGCTGCTTATTTTCCGCCTTCTGAATCAATATTCTACACAATAGTTTTGATGAACTGTGATCAGTCAATCAGGGACGACAACTACATTCATATAATTCCATGCAACACTAGAGGCTCTTCCTCTTCCTCACCAACATACGCTTATGCAGTTGTCGGAGACTATGTGTCGGTGGGAGATATTCCGTATTCATGCACCATCGGCACATCTATTATTCAACCGTTGAAGTCACTTCCAGAGCCCAGCAATCTTTCGATGTCAGATTTGCAAAATTATATGCTTCTGGGGCTTCAGCTTTCATTTTTGCCTCTCTTCTGCCACCGCCAATGCGAAATGAAAGGGCAAGATTGCTATGATATAAATTTCACTGCGACTGCCTTTCAATGCAAGAAGCCATGGAATGAACATATTCCCAACACTTCAGAGAAAAATTGGCTTTGGAAGTTTATAACAATTAATTTATTGCTACCCTTCTTTAGTAAGGCTTCAACTAAAATTTTCTTTGAAATCAAATCTTTATTTTATTCATTTTTCCTATTTTTTTTACAAAATTTCCTAATTCATTGTTAA 993 0.3968 MLREAQLVGVGLMTVVIHACFLSVCVAKHHKYQICSPSSCGDMRNISYPFRLQDDPPSCGYPEYELICENDRTMINLHGGKYLVTQINYQNYTIRVVDPGRKKDNCWISSPLNSIGAYYSDYEYPYYLPYYESPYHLPSEWSAAYFPPSESIFYTIVLMNCDQSIRDDNYIHIIPCNTRGSSSSSPTYAYAVVGDYVSVGDIPYSCTIGTSIIQPLKSLPEPSNLSMSDLQNYMLLGLQLSFLPLFCHRQCEMKGQDCYDINFTATAFQCKKPWNEHIPNTSEKNWLWKFITINLLLPFFSKASTKIFFEIKSLFYSFFLFFLQNFLIHC* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1129 330 PANTHER OS01G0690200 PROTEIN 11 274 - -
Vvi16g1129 330 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1129 Vvi-Chr16 19743671 19744847 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1129 13 97 Receptor kinase-like Gene Family AT5G38260 33.721 2.89e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1129 - - vvi:100854673 611.683