Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1127 ATGAGTATTGCTTTGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTCTTTAATGAGATCGCAGATACTGGTATTGGTATCAGTGCTTTTACATTTGCTAGCTTGTTGAGTGGGGCTGCAAGTATAGGTGCAATGGGCAAAGGTGAGCAGATTCATGGTCGGTTATTGAAGGGAGGCTACAAGTCAAACCAATGCATTTGTAATGCTTTGATCTCTATGTATTCTAGGTGTGGTAACATTGAAGCTGCTTTTCAAGTTTTTAATGAGATGGAAGATCGGAATGTGATATCTTGGACTTCAATGATCACGGGTTTTGCAAAACATGGATTTGCAACCAGAGCTTTGGAAATGTTCCATCAAATGCTTGAGACAGGGACAAAGCCGAATGAGATCACCTATGTTGCCGTATTATCAGCTTGTAGCCATGTTGGTATGATCTCTGAGGGACAGAAACACTTCAATTCAATGTACAAAGAACATGGAATTGTCCCAAGAATGGAGCATTATGCATGTATGGTTGATTTACTAGGCCGGTCTGGACTTCTTGTAGAAGCCATGGAGTTCATTAACTCAATGCCCCTCATGGCTGATGCTCTGGTTTGGCGAACACTGCTTGGAGCCTGCCATGTTCATGGTAATACAGAGCTTGGAAGACATGCTGCAGAGATGATTCTTGAGCAGGAACCAGATGACCCAGCAGCATATATCTTACTGTCAAACTTGCATGCTTCAGCAGGTCAGTGGAAAGACGTAGTGAAGATCAGAAAAAGTATGAAAGAGCGTAATTTGATCAAAGAAGCTGGCTGTAGTTGGATTGAGGTAGAAAATAGGGTGCACAGGTTCCATGTAGGGGAGACTTCCCACCCTCAAGCGTGGCAGATTTATCAAGAACTGGACCAACTGGCTTCCAAAATAAAGGAGATGGGTTACATCCCTGACACAGACTTTGTTCTTCACGACATAGAAGAACAACAAAAGGAGCAATTCCTTTTCCAACACAGTGAGAAAATAGCAGTGGCATTTGGGCTTATAAGCACAAGCCAGTCGAAACCCATCAGGATATTTAAGAATCTTCGCGTCTGTGGCGATTGCCATACTGCAATAAAGTACATTTCAATGGCAACAGGGAGAGAAATAGTAGTAAGGGACTCTAACCGGTTTCATCATATAAAGAATGGGGTGTGCTCTTGTAACGATTACTGGTGA 1740 0.2902 MSIALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHQMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACHVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEQQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1127 579 Pfam DYW family of nucleic acid deaminases 487 579 IPR032867 GO:0008270
Vvi16g1127 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 342 IPR002885 -
Vvi16g1127 579 Pfam PPR repeat family 271 319 IPR002885 -
Vvi16g1127 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Vvi16g1127 579 FunFam Pentatricopeptide repeat-containing protein At3g49170, chloroplastic 194 328 - -
Vvi16g1127 579 NCBIfam pentatricopeptide repeat 244 273 IPR002885 -
Vvi16g1127 579 NCBIfam pentatricopeptide repeat 274 308 IPR002885 -
Vvi16g1127 579 FunFam Pentatricopeptide repeat-containing protein At2g33760 329 509 - -
Vvi16g1127 579 Gene3D Tetratricopeptide repeat domain 331 442 IPR011990 GO:0005515
Vvi16g1127 579 Coils Coil 5 6 - -
Vvi16g1127 579 Pfam PPR repeat 347 370 IPR002885 -
Vvi16g1127 579 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 193 516 IPR046960 GO:0003723|GO:0009451
Vvi16g1127 579 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 271 IPR002885 -
Vvi16g1127 579 Pfam E motif 389 451 IPR046848 -
Vvi16g1127 579 Gene3D Tetratricopeptide repeat domain 190 330 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1127 Vvi-Chr16 19705689 19707428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1127 194 579 Glycoside Hydrolase AT3G49170 66.667 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1127 - - vvi:100854711 782.326