Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1125 ATGGAGGGCGGCGCAGGAAAAGGTTTGGAATGCCCGAAGATTATGGATGGGAAGGCGAGTAACGGGAAGGGTTTGAAGAAGGCCATTCCTTCTTGTTGCCTAAAAGCTAAGGCTTCGGCCCCTGAGAATGATGCAAAATGCCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTGGAGAAGCACATTCACTGAAAGTTGAAAATATTTTATTCCAGGGAAAGTCTGAGTTTCAAGAGATACTGGTTTTTGAGTCGTCAGCATATGGCAAAGTGCTTGTGCTTGATGGCATTGTTCAGTTGAGCGAGAAAGATGAATGTGCCTATCAGGAGATGATTGCTCACCTTCCCCTTTGTTCAATTGAATCCCCCAAGAGAGTTCTGGTTGTTGGTGGTGGTGATGGTGGGGTTCTTAGGGAAATTTCTCGTCATAGCTCTGTTGAGCTTATTGATATTTGTGAGATAGATAAGATGGTTATAGATGTGTGTAAGAAGTTTTTCCCACAGTTATACGTTGGGTTTGAAGACCCTCGTGTCCAGCTTCATGTTGGGGATGCTGTTGAATTTCTTAGACATGTACCTGAAGGGAAGTATGATGCAATTATTGTTGATTCATCAGATCCTGTGGGTCCTGCTCAAGAACTTGTCGAGAGACCATTTTTTGAGACAACAGCCAGAGCTTTGCGTCCTGGTGGTGTTCTTTGTAACATGGCTGAAAGCATGTGGCTCCACACACATCTTATTCAGGATATGCTTTCTATTTGTCGTGAAACATTCAAGGGTTCGGTCCATTATGCATGGGCAAGTGTTCCTACATATCCAAGTGGTGTGATTGGATTTCTATTGTGCTCAACTGAGGGGCCACCTGTGGATTTCTTGCATCCTGTTAACCCAATTGAGAAGTTAGAAGGCAATCTCAAGTGTGGTAGAGAACTTAGGTTTTATAACTCGGAGATTCACTCGGCTGCTTTTGCATTACCTTCATTTGTGAGGAGGGAGGTGAGCATTCTGCACAATTCTCCAACCCCAGCACAACGAATCTGTGTTTCTTAG 1110 0.4423 MEGGAGKGLECPKIMDGKASNGKGLKKAIPSCCLKAKASAPENDAKCHSTVVSGWFSEPQSCSDKAGNLMYFNNPMWPGEAHSLKVENILFQGKSEFQEILVFESSAYGKVLVLDGIVQLSEKDECAYQEMIAHLPLCSIESPKRVLVVGGGDGGVLREISRHSSVELIDICEIDKMVIDVCKKFFPQLYVGFEDPRVQLHVGDAVEFLRHVPEGKYDAIIVDSSDPVGPAQELVERPFFETTARALRPGGVLCNMAESMWLHTHLIQDMLSICRETFKGSVHYAWASVPTYPSGVIGFLLCSTEGPPVDFLHPVNPIEKLEGNLKCGRELRFYNSEIHSAAFALPSFVRREVSILHNSPTPAQRICVS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1125 369 Pfam Spermine/spermidine synthase domain 125 309 - -
Vvi16g1125 369 CDD AdoMet_MTases 169 253 - -
Vvi16g1125 369 Gene3D Vaccinia Virus protein VP39 120 355 IPR029063 -
Vvi16g1125 369 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 304 IPR030374 -
Vvi16g1125 369 PANTHER SPERMIDINE/SPERMINE SYNTHASE 38 353 IPR001045 GO:0003824
Vvi16g1125 369 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 146 159 IPR030373 -
Vvi16g1125 369 Pfam Spermidine synthase tetramerisation domain 75 122 IPR035246 -
Vvi16g1125 369 NCBIfam spermidine synthase 79 348 IPR001045 GO:0003824
Vvi16g1125 369 PIRSF Spermidine_synth 43 358 IPR030668 GO:0006595
Vvi16g1125 369 FunFam Spermidine synthase 1 46 119 - -
Vvi16g1125 369 Hamap Polyamine aminopropyltransferase [speE]. 54 354 IPR001045 GO:0003824
Vvi16g1125 369 FunFam Spermidine synthase 1 120 358 - -
Vvi16g1125 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 69 352 IPR029063 -
Vvi16g1125 369 Gene3D Spermidine synthase, tetramerisation domain 46 119 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1125 Vvi-Chr16 19678373 19684245 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1125 K00797 - vvi:100232840 751.51