Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1124 ATGGCGCTGGGTGCAATTTCAACCTGTGGTGGTGCTAAAGGAAGCACACTTCCTAATCATGCCATTCGAACAGCTAATCTCTCACATTCTAGCTCTTTCATGCCAAGTGGGAATGTTGGAGCTCTTCAGTTTAGACTAAAAGTAAAAAAATCAGTTTTTAGGTATCAAATCTTTCCACTATTCATGAAAGAGAAGGGGAGCCTAACCCCAAGGACTTTAGTTTTTGCTGCGCAAAAAGAAAGTGATGAATCTGAGAGTGGCAGCTCGCAGTCTTGCATTGAAGATCAAATGCATATGGCCCCGGAATATAATGATGGTTCTAGGGATCCAGATGTGGAAGTTGCTTCCATCACGCTCTCAGAGGCAGATCTCTCTCAAAGTGCTGTGCAGCTGGGAAACCAAGGGAACCTTCTTGACAAACTAAAGGCTGTTCACTTGCATATATTGGCAATGGAACAATGGAATGCTTCCCGAATTAAATTATGCCACAGAAATTACATGGCGAGTGCTACAAACTTAATCCATTACCTGGCATTGAAATGCCTTGATGTTGAGCAGCTCAAAGAAGATCTTTCATCTGTAGGTCTTCTGAATTTGGAAACCATCAATCCATGTGTCATTGCAAATCTCACTGCTGGCATCCAGATGTTGGAAAACCTGAAATCTTACCCTCTGAACATCAAAGAGAATGCTTGTGGAGAAATTTCCAATAAAAAAAGTTTGGACAAACAAAAGAAAGGGGAATTTATCATAGATACAATGAGGAAGAAAGCATCCTCCAATATGAAGATATTATTGGGCCCACTTGCAGATGAAAGAACTGCTCATATCATGGTAACAGTTGGGCAAGAAGTGACTGAGAATGAAACACTTATAACTGATATACTCAAGAGTGGGGCCACCATTATTAGGATTAATTGCGCACATGGAAACCCGAGCATCTGGAGTGAAATAATCAGAAGGGTGAGAAGAAGCTCTCAGATGCTGGAGAAGCCATGTCGAATTCTCATGGACTTAGCTGGACCAAAGCTACGGACAGGCAACATGAAGGCTGGTCCATGTGTGATTAAAATCTCTCCTAAGAAGAATGCTTGTGGAGATATAATGCTACCTGCTCAAGTTTGGTTATGTCACAAAGGAGCAAATCCCCCTGCTGGGCATATATCCCCTGATGCAATTCTATCTATAGATGGCCAAAAATTTCTCAATAAGCTTCAGTTGGGTGATACTGTGAGATTCCGTGATGCAAGAGGAAAAAAAAGGACACTGAAGATTTGTAATAGATTTCCTGTCTTTGCTGGTACTGCATTCATGGCCGAGTGCAACAGGACTGCTTATGTTCAGTCAGGAACTGGACTGTACATTAAGGGACAGAAACACAAGTCCTCTGTTGGAGAAGTGGTGGACGTTCCCGCCGTTGAGCAGTTTGTCAGATTAAGAGTTGGAGACTTGCTGATCATATCACTAGATAGCTCAATCGAACAGGATGAGCTGACTCAACCTACAGTTGATGCTTATAGGGTAACTTGTCCATCTAGTTTTCTTTTTGATTCAGTCAAACCAGGCGAACCCATTGCTTTTGATGATGGGAAGATTTGGGGTGTAATCCAAGGAACAAGTGCTTCAGAGATTATTGTATCAATCACTCATGCAAGTCCAAGAGGCACTAAACTTGGTGCAGAGAAATCAATCAACATCCCGGAGAGCAATATCAGGTTTGAAGGCCTCACTACAAAGGATCTCATGGATCTTGAATTTGTTGCTGCTCATGCTGACATGGTGGGAATTTCATTCATCCGAGACGTTCGTGACATTGTTGTGCTTCGTGCAGAGCTGGAGAAGAGGAAGCTTCACAACCTAGGAATTGTGTTAAAGATTGAAACAAGCAGTGGGTTTGATAAACTGCCTCTCTTACTGTTGGAGGCAATGAAATCACCAAATCCCTTGGGAGTTATGATCGCCAGAGGAGATCTTGCAGTGGAGTGCGGTTGGGAAAGGTTGGGGGATATACAGGAAGAAATTCTATCGATTTGTAGTGCTGCCCATGTACCAGTCATTTGGGCTACTCAGGTTCTTGAGTCGCTTGTCAAGTCTGGCGTGCCTACTAGAGCTGAACTTACAGATGTGGCCAATGGAAGAAGGGCAAGTTGCATCATGTTAAACAAAGGCAAGCACATTGTGGATGCAGTTTCTACTTTGGATATCATCCTGCAAGGCAAGTCCACAAAGATGAAAGCAGAGCTCAAGCCTCTTGTACTTTCTAGCCACCTGTTTTAA 2277 0.43 MALGAISTCGGAKGSTLPNHAIRTANLSHSSSFMPSGNVGALQFRLKVKKSVFRYQIFPLFMKEKGSLTPRTLVFAAQKESDESESGSSQSCIEDQMHMAPEYNDGSRDPDVEVASITLSEADLSQSAVQLGNQGNLLDKLKAVHLHILAMEQWNASRIKLCHRNYMASATNLIHYLALKCLDVEQLKEDLSSVGLLNLETINPCVIANLTAGIQMLENLKSYPLNIKENACGEISNKKSLDKQKKGEFIIDTMRKKASSNMKILLGPLADERTAHIMVTVGQEVTENETLITDILKSGATIIRINCAHGNPSIWSEIIRRVRRSSQMLEKPCRILMDLAGPKLRTGNMKAGPCVIKISPKKNACGDIMLPAQVWLCHKGANPPAGHISPDAILSIDGQKFLNKLQLGDTVRFRDARGKKRTLKICNRFPVFAGTAFMAECNRTAYVQSGTGLYIKGQKHKSSVGEVVDVPAVEQFVRLRVGDLLIISLDSSIEQDELTQPTVDAYRVTCPSSFLFDSVKPGEPIAFDDGKIWGVIQGTSASEIIVSITHASPRGTKLGAEKSINIPESNIRFEGLTTKDLMDLEFVAAHADMVGISFIRDVRDIVVLRAELEKRKLHNLGIVLKIETSSGFDKLPLLLLEAMKSPNPLGVMIARGDLAVECGWERLGDIQEEILSICSAAHVPVIWATQVLESLVKSGVPTRAELTDVANGRRASCIMLNKGKHIVDAVSTLDIILQGKSTKMKAELKPLVLSSHLF* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1124 758 SUPERFAMILY PK beta-barrel domain-like 476 571 IPR011037 -
Vvi16g1124 758 FunFam Pyruvate kinase family protein 574 736 - -
Vvi16g1124 758 FunFam Pyruvate kinase family protein 272 352 - -
Vvi16g1124 758 FunFam Pyruvate kinase family protein 464 573 - -
Vvi16g1124 758 PANTHER PYRUVATE KINASE 216 738 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1124 758 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 270 737 IPR015813 GO:0003824
Vvi16g1124 758 Gene3D - 574 735 IPR040442 -
Vvi16g1124 758 Gene3D - 272 358 IPR040442 -
Vvi16g1124 758 Gene3D - 474 573 IPR015806 GO:0004743|GO:0006096
Vvi16g1124 758 Pfam Pyruvate kinase, barrel domain 477 736 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1124 758 Pfam Pyruvate kinase, barrel domain 273 359 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1124 Vvi-Chr16 19670139 19675602 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1124 K00873 - vvi:100246758 1479.54