Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1122 ATGTCACAGCAATATCTTCGATGGCAGCTTAATGCATTGGGAGAAAGGGCACATGTGTTTTCTGCTTTTGGATTTGTGCATAAGATCACTACCTTTGAGAAGACAGCCGGATTCCAGGCTTTGGTGCAATTTTCAGATTCAGAAACTGCCTCTGCTGCAAAAAATGCCTTGGATGGAAGGAGCATCCCGAGGTACCTACTTCCAGAGCATTTGGGACCATGCACTCTTAGGATTACATTTTCTGCACACACAGATTTGAGTGTGAAATTCCAAAGCCACCGCAGCAGGGACTACACTAATCCTTATCTTCCTGTTGCTTCATCAGCCATAGATGGAAGTGGTCAATTTAGCATGGGTTTTGATGGAAGAAAAGTAGAACCTGAAAGTAATGTTCTTCTTGCATCTATTGAGAACATGCAGTATGCTGTCACCTTGGATGTCTTACACATGGTTTTTTCTGCTTTTGGGCCTATCCAAAAGATTGCAATGTTTGATAAGAATGGAGGAGTTCAGGCTTTGATTCAATACCCTGATGTTCAGACAGCAATTGTTGCTAAGGAAGCCTTGGAAGGACACTGCATTTATGATGGAGGGTTTTGCAAGCTCCACATCTCATATTCACGCCATACAGATCTCAGTATAAAGGTCAACAATGATAGGAGCAGAGATTACACTAGCCCCGTGTTGAGCTCCCAACCTTCTGTTCTGGGCCAACAACCAGTTCCAATTCCAGGTCCCTCCACTCATCAGTTTGAAGGAGCCCAGTATGCCTCACCTTCGGATCAGCCGGTGATACATCAGCCTTCTGCAGGATGGGCCACATCTGCTGCAGCAGCAGGAGCACCACCACCACCACCTCAGTCCATGCCAATGCAGCAGCACAACCACCCCTACATGCCACCTGGGACCATGCCTCCTCAACCAGTCCCTGGAATGATGCCAATGCAGACCCAGACTGGCCTACCTCAGTCAGCAGCAATGCCCCCATACAGCCATTGA 999 0.4735 MSQQYLRWQLNALGERAHVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYLLPEHLGPCTLRITFSAHTDLSVKFQSHRSRDYTNPYLPVASSAIDGSGQFSMGFDGRKVEPESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTSPVLSSQPSVLGQQPVPIPGPSTHQFEGAQYASPSDQPVIHQPSAGWATSAAAAGAPPPPPQSMPMQQHNHPYMPPGTMPPQPVPGMMPMQTQTGLPQSAAMPPYSH* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1122 332 Pfam RRM-like domain 129 207 IPR021790 -
Vvi16g1122 332 FunFam Polypyrimidine tract-binding protein-like 2 128 233 - -
Vvi16g1122 332 SUPERFAMILY RNA-binding domain, RBD 135 227 IPR035979 GO:0003676
Vvi16g1122 332 CDD RRM3_PTBPH1_PTBPH2 129 225 IPR034794 -
Vvi16g1122 332 MobiDBLite consensus disorder prediction 221 332 - -
Vvi16g1122 332 MobiDBLite consensus disorder prediction 221 269 - -
Vvi16g1122 332 Gene3D - 128 233 IPR012677 -
Vvi16g1122 332 Gene3D - 11 108 IPR012677 -
Vvi16g1122 332 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 18 306 - -
Vvi16g1122 332 SUPERFAMILY RNA-binding domain, RBD 18 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1122 Vvi-Chr16 19657283 19662377 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1122 K14948 - vvi:100855089 562.762