Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1121 ATGTCCACTCTTCAAGCTTCTCTTATCTGCAAACCTTCATTGGCTTTTTCGAAGCCTTATTCTTCTTCGTCTGCGAGGCGTGTTTGTCTCTCTAGACTGTCTGTTTGTAGGATTTCTTTTTCTGCATTCAAAGCTGTTTCCCCGAAATCGAGATTTCGCAATCACCGGTTGTCAATTCGATGCACATTGCAGCCGGAGATGGAGGGTGAGTGGCAGGAAGTGGAAAATTTGGTGATGAATTCAGGGGAATCGGAGGGAGGATTGGTGGAGGCGGAGCAGGGGGTTTCGGGATTGGAGGCGGTGGAGAGTGAGGGTTTGGTGGAGAATGAGGGGACGAAGAGTCGGCTTGCGGTGGTGGTGTTTGCGATGGGAGTGTGGGGAGCGGTGAGGACATGGTTTGAGAAGGTGCTGGGGTCGGAGTGGTTCAGTTGGTGGCCGTTTTGGCGGCAGGAGAAGCGGTTGGAGCGGCTGATTTCGGAGGCGGATGCGAATCCTAAGGATGTTGAGAAGCAGAGCGCGCTGCTGGTTGAACTCAATAAACACAGTCCTGAGTCTGTCATCAAGAGATTTGAACAAAGGGATCATGCAGTAGACAGTAGAGGAGTTGCAGAATATCTTCGAGCTCTAGTGGTCACTAATGCAATTGCTGAATATCTTCCAGATGAGCAATCTGGAAAACCTTCTAGCCTTCCTACATTGTTGCAAGAATTGAAGCAGCGTGCCTCAGGAAACATGGATGAAGCCTTTTTGAACCCTGGCATATCTGAGAAGCAGCCGTTGCATGTTGTGATGGTTGATCCTAAAGTTTCAAGCAGATCATCACGTTTTGCACAAGAGCTGATCTCAACTATCTTGTTCACAGTTGCTGTTGGTTTGGTGTGGGTAATGGGTGCTGCTGCACTCCAGAAGTACATAGGTAGCTTAGGTGGGATAGGTGCATCAGGTGTTGGCTCAAGCTCTTCCTATGCGCCTAAAGAGTTAAATAAAGAAGTTATGCCGGAGAAGAATGTTAAGACATTTAAGGATGTGAAAGGCTGTGATGATGCAAAACAGGAGCTTGAGGAAGTAGTGGAGTACCTCAAAAACCCTGCAAAGTTTACTAGACTTGGGGGGAAATTGCCAAAGGGAATTCTTTTGACAGGAGCACCTGGCACAGGAAAAACTCTGCTTGCCAAGGCTATTGCTGGAGAGGCTGGAGTACCATTTTTCTATAGAGCAGGTTCTGAATTTGAAGAAATGTTTGTTGGGGTTGGTGCTCGGCGTGTAAGATCCTTATTTCAAGCAGCTAAAAAAAAGGCTCCTTGCATCATTTTCATTGATGAAATAGATGCTGTTGGATCTACACGAAAGCAATGGGAAGGCCATACAAAAAAAACATTGCACCAACTGCTTGTTGAAATGGATGGTTTTGAACAGAATGAGGGCATAATATTGATGGCAGCAACAAACTTGCCTGATATTCTTGATCCAGCTTTAACAAGACCTGGTAGATTTGACAGGCATATTGTTGTTCCAAATCCAGATGTGAGGGGCCGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTGCTCGTGGCACCCCAGGGTTCAATGGGGCTGATCTTGCAAATTTGGTAAACATAGCTGCCATTAAGGCTGCTGTTGAAGGTGCTGACAAGTTAAATGCTTCACAATTGGAGTTCGCAAAAGATAGGATAATCATGGGAACAGAGCGGAAAACAATGTTCTTATCAGAAGAATCAAAGAAGCTTACTGCATATCATGAGAGCGGTCATGCAATTGTTGCCTTCAACACAGATGGTGCTCATCCAATTCATAAGGCAACAATTATGCCTCGGGGATCTGCTTTGGGAATGGTTACTCAGCTTCCTTCAAATGATGAGACAACAATTAGCAAGAAGCAGTTATTAGCTCGTCTTGATGTTTGTATGGGAGGAAGAGTAGCAGAAGAGCTTATCTTTGGTCAAGACCATGTCACAACCGGAGCAAGTAGTGATCTAAACACAGCCACAGAGCTTGCCCAATATATGGTATCTACTTGCGGGATGAGTGATACAATTGGGCCAATTTATATCAAAGATCGACCAGGTGTAGAAATGGAATCGCGAATTGATGCGGAAGTGGTGAAGCTCCTCAGAGAAGCCTATGACCGTGTGAAAGCCCTGCTAAAGAAGCACGAGAAGGCGCTACATGCCTTGGCAAACGCACTTTTAGAGTGTGAAACCCTCAATGCAGAAGACATCAAACGCATCCTTCTTCCTTACCGAGAAGGCCGGCTGCCTGAGCAACAAACGCAGCCAGAGGTGGATGAGGAGCTGGCGTTGGCTTAA 2364 0.4611 MSTLQASLICKPSLAFSKPYSSSSARRVCLSRLSVCRISFSAFKAVSPKSRFRNHRLSIRCTLQPEMEGEWQEVENLVMNSGESEGGLVEAEQGVSGLEAVESEGLVENEGTKSRLAVVVFAMGVWGAVRTWFEKVLGSEWFSWWPFWRQEKRLERLISEADANPKDVEKQSALLVELNKHSPESVIKRFEQRDHAVDSRGVAEYLRALVVTNAIAEYLPDEQSGKPSSLPTLLQELKQRASGNMDEAFLNPGISEKQPLHVVMVDPKVSSRSSRFAQELISTILFTVAVGLVWVMGAAALQKYIGSLGGIGASGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLSDDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGADKLNASQLEFAKDRIIMGTERKTMFLSEESKKLTAYHESGHAIVAFNTDGAHPIHKATIMPRGSALGMVTQLPSNDETTISKKQLLARLDVCMGGRVAEELIFGQDHVTTGASSDLNTATELAQYMVSTCGMSDTIGPIYIKDRPGVEMESRIDAEVVKLLREAYDRVKALLKKHEKALHALANALLECETLNAEDIKRILLPYREGRLPEQQTQPEVDEELALA* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1121 787 Coils Coil 720 747 - -
Vvi16g1121 787 SMART AAA_5 373 508 IPR003593 GO:0016887
Vvi16g1121 787 ProSitePatterns AAA-protein family signature. 476 494 IPR003960 GO:0005524|GO:0016887
Vvi16g1121 787 PANTHER METALLOPROTEASE M41 FTSH 110 769 - -
Vvi16g1121 787 SUPERFAMILY FtsH protease domain-like 588 765 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi16g1121 787 Gene3D Peptidase M41 581 768 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi16g1121 787 Pfam AAA+ lid domain 528 566 IPR041569 -
Vvi16g1121 787 FunFam ATP-dependent zinc metalloprotease FtsH 507 581 - -
Vvi16g1121 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 601 IPR027417 -
Vvi16g1121 787 CDD RecA-like_FtsH 339 504 - -
Vvi16g1121 787 Pfam Peptidase family M41 587 762 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi16g1121 787 FunFam ATP-dependent zinc metalloprotease FTSH 11 324 506 - -
Vvi16g1121 787 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 783 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vvi16g1121 787 Gene3D - 507 580 - -
Vvi16g1121 787 FunFam ATP-dependent zinc metalloprotease FtsH 581 770 - -
Vvi16g1121 787 Pfam ATPase family associated with various cellular activities (AAA) 377 505 IPR003959 GO:0005524|GO:0016887
Vvi16g1121 787 NCBIfam ATP-dependent zinc metalloprotease FtsH 259 759 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vvi16g1121 787 Gene3D - 317 506 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1121 Vvi-Chr16 19642987 19655468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1121 2 765 Miscellaneous Gene Families AT5G53170 76.051 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1121 K08955 - vvi:100250114 1498.03