Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1116 ATGAAGAAATTACAGGGTTCAGCAGTAAAGCAAGCCTCAACACAAATATCACATGAGGCACAAAGTGATCAACAAAATAGCACATCTGAGGGTCCTGTAGTGGATTCAGGTTCAGTATCCAGTTCAAACAATGAGACCAGGAAAGTTTCACATCAAGATATCGAATTTGTTCAGAATTTGATAGAACGGTGTCTACAGTTGTACATGAACAGAGATGAGGTTGTAAAAACCCTTTCGACTCGGGCAAGAATAGAGCCTGGATTTACAACCTTGGTATGGCATAAACTGGAAGAAGAAAATGCTGACTTTTTCAAGGCCTACAACATAAGGCTAGAGTTGAAAAGGCAAATTATTGTGTTCAATCAATTACTTGAACATCAGTACTATCTGATGAACCACCCAGTACCTCCAAATGTTCCACTGGCTCCCATACAGAATGGGATTCATCCCATGCCTGTTAACAATTTGCCTATGGGATACCCTGTTCTGCAGCAGCCTCCTCTTCCAGCTACACATATCAACTCCATGAGCTGCAGTATGTCTTCTTCCCGTGTGGTAAAGGGGATCCCTGCATCAGGAAATTTCCATCCTATTCAAATGAATGCTGCGAATGATGTGCTGCTTGACAGAACTGCATCTGATCCGGTACCTGGTATTCCTACTGCTGGAGTTAAGTCAGAGGTGGCTTCGAGTCCTCCATCAGTGGCATCCAATGGCCATTTTTCTTTTGCTCCAGAGATATCAGGAATGAGTGTGGATGCATCCACCCTTCACTCAACATTTACATCTGACGTGTCAAGTTCAGAAGGACTGCAACTGGGGCCAGATGGTGGGACTGGAAATTTGAGGGAATCATTCTTGTCATTGGCTCATATTCCATGGAGTGTTAGCCTTACAGATCTAACTGTGGACTTGCCAAACTTGGAAGATATTGGAGCGCTGGGAAACTATTCTGGTTCCCCCTTTCTACAATCAGATATTTTGCTCGATTCTCCTGAACAAAATGATTTAGTTGAGGAGTTCTTCGTGGACAACGTCCCCGGTCCAGACTCTCAATCAGATGAAGAGAAAAAACCTTAA 1080 0.4343 MKKLQGSAVKQASTQISHEAQSDQQNSTSEGPVVDSGSVSSSNNETRKVSHQDIEFVQNLIERCLQLYMNRDEVVKTLSTRARIEPGFTTLVWHKLEEENADFFKAYNIRLELKRQIIVFNQLLEHQYYLMNHPVPPNVPLAPIQNGIHPMPVNNLPMGYPVLQQPPLPATHINSMSCSMSSSRVVKGIPASGNFHPIQMNAANDVLLDRTASDPVPGIPTAGVKSEVASSPPSVASNGHFSFAPEISGMSVDASTLHSTFTSDVSSSEGLQLGPDGGTGNLRESFLSLAHIPWSVSLTDLTVDLPNLEDIGALGNYSGSPFLQSDILLDSPEQNDLVEEFFVDNVPGPDSQSDEEKKP* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1116 359 NCBIfam TIGR01589 domain 54 110 IPR006476 -
Vvi16g1116 359 PANTHER OS02G0137100 PROTEIN 48 308 IPR006476 -
Vvi16g1116 359 MobiDBLite consensus disorder prediction 7 47 - -
Vvi16g1116 359 MobiDBLite consensus disorder prediction 1 48 - -
Vvi16g1116 359 Pfam Plant protein 1589 of unknown function (A_thal_3526) 57 108 IPR006476 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1116 Vvi-Chr16 19553643 19559744 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1116 - - vvi:100257023 699.893