Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1113 ATGATGTTGATCAAAGCTTCCATTTCCAAAGCTTGGAAACACCAAAGGCTAAAGGAGTTCAAATTATACACAGCACATCAATCCAATCTCAGTGAAATTATATCCACAAACATTGCTATAAGCAATTATGCAAAACAATCAAAACTGGATGTTGCCCGCCAACTGTTCGACCAGATGCCTCAACGAACTGTCGTGTCGTGGAACACTATGATATCTAGCTACTCAAAGCATGGACGATTCAGTGAAGCTCTATTTCTAGTTTACTCCATGCACCGCAGCCATATGAAGCTCAGTGAATCCACGTTCTCGTCGGTTTTGAGTGTTTGTGCTCGTTTGAGGTGTTTGCGCGACGGGAAGTTGATCCATTGTCTTGTTCTAAAATCTGGGTCGGAGAGTTTTGAGCTTGTGGGGAGTGCTTTGCTGTATTTTTATGCAAGTTGCTTTGAAATTGGGGAGGCACGGCGGGTTTTTGATGTGTTGGTTCGGAGGAATGAGGTGTTGTGGAGTTTGATGCTTGTGGGGTATGTGACTTGTAATGTGATGGATGATGCTTTGAGTGTGTTTGTGAAGATGCCGAGGAGAGATGTTGTTGCCTGGACGACTTTGATTTCTGGGTTTTCTAAGAATGGGGATGGTTGTGGGAAGGCCTTGGAGATTTTTAGGTTGATGATGAGGAGTGGTGAAACGACTCCCAATGAGTTTACTTTTGATTGTGTGGTGAGGGCTTGTGGTAGACTCGGGATTTTGAGTGTAGGGAGGACTGTTCATGGGCTTTTGATGAAATGTGGGTTGGAATATGATCCCTCAATTGGAGGGGCTCTTGTTGAGTTCTATTGTGAATGCGAAGCTATTGATGATGCCTTGAGAGTGTGTAAAGGCGTTGTTAACCCGTGTTTAAATGCTTTGAATTCCTTAATTGAAGGGCTTATATCGATGGGCAGAATTGAGGATGCTGAGCTGGTTTTTAACGGAATGACAGAGATGAATCCAGTTTCATATAACTTAATGATTAAAGGGTATGCAGTTGGTGGTCAAATGGATGATTCTAAGAGATTGTTTGAGAAAATGCCTTGCAGAACTATATTTTCTTCAAATACTATGATTTCAGTGTACTCTAGGAATGGAGAAATTGATAAAGCTTTGGAACTTTTTGAAGAAACTAAGAATGAAAAAGATCCTGTGACATGGAATTCAATGATATCGGGTTATATTCATAGTGGTCAACCTGAAGAGGCTTTGAAACTATATATAACAATGCACAGATTATCAATACAACAAACTCAATCTACATTCTCTGCTCTGTTCCATGCATGTTCATGTCTTGGATCCCTTCATCAAGGACAATTACTGCATGCCCATCTGATTAAAACACCATTTGAATCAAATGTTTATGTTGGAACATCCCTCATAGATATGTACTCCAAATGTGGGAGCATCATGGAGGCTCAAACATCTTTTGTGAGCATCTTTTCACCCAACGTGGCAGCTTGGACGGCTCTGATCAATGGTCATGCATATCATGGGCTCGGGTCTGAGGCAATTTCACTCTTTGATCGTATGATAGAGCAAGGATTAGCCCCAAATGGAGCTACTTTTGTTGGAGTTCTGTCTGCTTGTAGTCGTGCAGGTCTGGTCAATGAAGGAATGAAAATTTTCCACTCAATGGAGAGATGTTATAGTGTAACCCCAACATTAGAACACTATGCATGTGTGGTTGATCTTCTGGGCCGATCAGGCCATATACGAGAAGCAGAGGAGTTTATCAAGAAGATGCCACTTGAAGCAGATGGGGTTGTCTGGGGAGCATTGCTTAGTGCTTGTTGGTTCTGGATGGACCTGGAAGTGGGTGAGAGAGTGGCTGAGAAGATGTTTAGTTTTGATCCCAAGCCAATCTCTTCTTATGTTATTTTGTCCAACATATATGCAGGGCTAGGGAGGTGGAGGGAGAAGATGATGGTAAGGAAGATATTGAGGGGTTTCAAAGTGAAGAAGGATCCTGGATGTAGTTGGATTGAGCTTAACAATAAAATTCATGTGTTCTCTATAGAAGATAGATCCCATCCATATTGTAATATGATTTATGCAACTTTGGAGCACCTAACAGCAAATATAAACTCAGTTGTTCATTTTGATCATGTTTCTATACCAATAACACAGGCTGTTAATTTCAGCACACCATCCTTTAATTAG 2190 0.4132 MMLIKASISKAWKHQRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYCNMIYATLEHLTANINSVVHFDHVSIPITQAVNFSTPSFN* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1113 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Vvi16g1113 729 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 175 705 IPR046960 GO:0003723|GO:0009451
Vvi16g1113 729 NCBIfam pentatricopeptide repeat 394 424 IPR002885 -
Vvi16g1113 729 NCBIfam pentatricopeptide repeat 365 387 IPR002885 -
Vvi16g1113 729 NCBIfam pentatricopeptide repeat 496 528 IPR002885 -
Vvi16g1113 729 NCBIfam pentatricopeptide repeat 65 98 IPR002885 -
Vvi16g1113 729 NCBIfam pentatricopeptide repeat 197 229 IPR002885 -
Vvi16g1113 729 NCBIfam pentatricopeptide repeat 331 357 IPR002885 -
Vvi16g1113 729 NCBIfam pentatricopeptide repeat 531 563 IPR002885 -
Vvi16g1113 729 NCBIfam pentatricopeptide repeat 302 328 IPR002885 -
Vvi16g1113 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Vvi16g1113 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 230 IPR002885 -
Vvi16g1113 729 Pfam PPR repeat 36 62 IPR002885 -
Vvi16g1113 729 Pfam PPR repeat 363 388 IPR002885 -
Vvi16g1113 729 Pfam PPR repeat 331 358 IPR002885 -
Vvi16g1113 729 Pfam PPR repeat 303 328 IPR002885 -
Vvi16g1113 729 Pfam PPR repeat 568 591 IPR002885 -
Vvi16g1113 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Vvi16g1113 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Vvi16g1113 729 Gene3D Tetratricopeptide repeat domain 259 359 IPR011990 GO:0005515
Vvi16g1113 729 Gene3D Tetratricopeptide repeat domain 14 122 IPR011990 GO:0005515
Vvi16g1113 729 Gene3D Tetratricopeptide repeat domain 123 251 IPR011990 GO:0005515
Vvi16g1113 729 FunFam Pentatricopeptide repeat-containing protein 357 489 - -
Vvi16g1113 729 Gene3D Tetratricopeptide repeat domain 360 489 IPR011990 GO:0005515
Vvi16g1113 729 SUPERFAMILY TPR-like 274 432 IPR011990 GO:0005515
Vvi16g1113 729 Gene3D Tetratricopeptide repeat domain 512 672 IPR011990 GO:0005515
Vvi16g1113 729 FunFam Pentatricopeptide repeat-containing protein At1g25360 124 254 - -
Vvi16g1113 729 Pfam PPR repeat family 194 243 IPR002885 -
Vvi16g1113 729 Pfam PPR repeat family 63 111 IPR002885 -
Vvi16g1113 729 Pfam PPR repeat family 492 540 IPR002885 -
Vvi16g1113 729 Pfam PPR repeat family 392 438 IPR002885 -
Vvi16g1113 729 FunFam pentatricopeptide repeat-containing protein At2g13600-like 490 676 - -
Vvi16g1113 729 Pfam E motif 612 672 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1113 Vvi-Chr16 19516022 19518211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1113 14 704 Glycoside Hydrolase AT3G49170 29.412 5.34e-97 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1113 - - vvi:100241523 1472.22