Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1110 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTTCAGCTTCTCGAACCCCATTTGGATTGAACGCAAAATTTTCAAATCATCAAACCCCTTTGAGGAGGCCCCTAGTTTTGGCATTCAAAGCAGATAAAGCCAAGAACATAGCTCTGGTTACTCCCCATGAGCCAATCCCTTTACCTATAGAGACTTCTAAAGATCATAAGAAGAGACTTCGTAGGGCTTCCAAGCCTTCAAAGAGAGTAAAAGCGGTCAGTACAGATGAAGTATCGCCATGTAGTGTAGAATTGGATTACAATGAAGCTGCTGCCAAACTTGAAAATATATACAAGCTTAGCCCTGCAACTGATGTTTCAGAGGCAGAAGATTTAGAACGTGTCGTTAGGAGAGGGCGACAGAGGAGGAAGAGAGTTACTTTGGCTGATGACAAGGCAGAGAAGGAGGTTAGTGATAATGTAGTGAGGATCCATAATAAGAAACCGAAACGATTGAGTCTTGAGAAGAGGATTGCTTTGAGTAAGATGAAGCAAGAAAAAGCAGTTGCTTCAATTCAAAAGAAAAGGGACAGTAAAAATGAAGATGAAAATATTGATGTGCTTGTTAGGGAGTACTCGGCTTCTACTGACTTGGTCAGTTTGGACTGGAAGAAAATGAAGATACCACCCGTGCTTCCTCCCTCAGAGCATGCATGGCTATTCAAGCTAATGCAGCCCATGAAGGGACTCCTTGAAGTGAAAGACAACTTACAAAAGGATTTGGGGAGAGAACCAACCGATGGGGAATTAGCAGAGGCCATGAGTATGAGTGCAGTTCAAGTAAGAAGACACATGGAAGTTGGTCAAGCAGCAAGAAACAAGCTGATTAAGCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTTGCCAATGGCCCAAAGTTTCAAGACCTGTGTCAAGCAGGAGTGAAGGGCCTTATCACAGCCATCGATCGCTTTGAACCAAAAAGGAGTTTCCGGCTCTCAACCTATGGTCTGTTTTGGATTAGGCATGCCATCATGCGCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGGTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAAAGATTACCAACAGAGGAAGAGATAATAGAAAAGGTTGGAATCTCCCCTGAGAGGTACCATGAAGTGATGAGGGCCTCAAAATCCGTCCTCTCTCTCCATGCAAGGCATGCAACCACACAAGAAGAGTACATCAATGGAATTACAGATGTTGAAGGTGTTGGGGGTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGTCTTGATGGTAAGGGTGATCGGACACTGGGGGAGATTGCAGGAAACCTAAGCATCTCAAGAGAAATGGTTCGAAAGCATGAGGTGAAGGCTCTCATGAAGCTCAAGCATCCAGCACGAGTGGATTATCTTCGCCAATACATATTCTAA 1557 0.4438 MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIETSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAEDLERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVASIQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYIF* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1110 518 Pfam Sigma-70 region 2 284 349 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 202 351 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 Gene3D - 274 352 - -
Vvi16g1110 518 Pfam Sigma-70 region 3 240 279 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 Pfam Sigma-70 region 3 368 432 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 Gene3D - 232 273 IPR036388 -
Vvi16g1110 518 Gene3D - 357 409 IPR036388 -
Vvi16g1110 518 NCBIfam sigma-70 family RNA polymerase sigma factor 280 506 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 Gene3D - 441 518 IPR036388 -
Vvi16g1110 518 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 94 517 - -
Vvi16g1110 518 PRINTS Major sigma-70 factor signature 478 493 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 PRINTS Major sigma-70 factor signature 311 324 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 PRINTS Major sigma-70 factor signature 457 469 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 PRINTS Major sigma-70 factor signature 335 343 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 PRINTS Major sigma-70 factor signature 493 504 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 Pfam Sigma-70, region 4 453 506 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vvi16g1110 518 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 363 423 IPR013324 -
Vvi16g1110 518 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 445 516 IPR013324 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1110 K03093 - vvi:100250120 965.296