Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1107 ATGAAAATCTTCAGAGTTGTCAGTCACAAAAGAACCTTGCTAGGGTTTAAGAGAAGCTTCAGTACAGAACCAGAACTGAAGGACTTTTTAAACTACTTGGACAATCTCAAAAACTATGAGAAATGTGGTGTCCCCAAAGATGCAGGCACAGACTCAAGCCATGGCTTTGATCTGGGCCGCATGAACCGGTTGATGGATCGGCTTGGTAACCCTGAGACAGGGTTTAAGGCTGTTCACATTGCTGGGACCAAAGGAAAAGGGTCAACTGCTGCATTTCTTGCCAATATTTTACGGACAGAAGGTTATGCTGTTGGTTGTTATACTAGCCCACATGTTCGGACTATCAGAGAGCGTATATCACTGGGAAAATTAGGTGAACCGGTCTCAGCAAAGGCATTGAATTGTTTGTTCCATAGGATTAAGCCAATCCTTGACGAGGCAGTGGCACTTGAAAATGGGCGTTTGAGTCATTTTGAGATTCTTACTGCAATGGCGTTCAAGCTTTTTGCTCAAGAGAATGTTGATGTTGCAGTTATTGAGGCTGGACTGGGGGGAGCACGGGATGCGACAAACATAATTTCTAGTTCTGGACTAGCTGCAGCAGTTATAACAACAATAGGGGAGGAACATTTGGCTGCACTAGGGGGTTCCCTGGAAAGCATTGCAATGGCAAAGTCAGGAATAATCAAACAAGGTTGCCCATTGGTGCTGGGGGGCCCATTCCTTCCACATATTGAACACATTTTTCTTGACAAAGCATCCTCAATGTGTTCTCCTGTAGTATCAGCATCTGGACCTGGAAATAGAAGTGCTGTAAAAGGAGTTAGCAAATCCAATGGAAAACCTTTCCAATCTTGTGATATAGTGATAGAAGTTGAGAGGGACTTTAAATTGTTCATCGAGTTATTTGACGTGAAACTACAGATGCTTGGAATTCACCAACTTCAAAATGCTGCAACTGCCACTTGTGTGGCACTGTGCTTGCGTGATAAAGGATGGAGAATTTCAGATGAATCCATTCATGCTGGTCTAGAGCATGCCTATTTGCTTGGGAGAAGTCAGTTTCTAACATCTACAGAAGCTGAGACATTAGGGCTACCTGGAGCAACCATAATGCTTGATGGAGCTCACACCAAAGAATCTGCTAAAGCTTTGGTGGACACTATTCAAATGACATTTCCAGAGGCACGATTGGCTCTTATTGTTGCAATGGCAAGTGACAAAGACCATATGGCTTTTGCAAGAGAATTTCTTTCAGGTGGACAATTAGAGGCTGTCTTTCTAACAGAGGTCAACATTGCTGGAGCAAAATCTCGAACAACTTCTGCTTCCATGTTAAGAGATTGTTGGATCCAAGCTTCCAAGGAACTGGGCATCAATACTCTTCATGATGGAATGGAAGAATACCAGAAGTTGTTTGAGAATCAATCATTCTGCTCTGCAGGGGAATCAAAACATAAAACCATACTGGCTGCTGAGAATTCATTACTAGTTTCCTTGAGGGTTGGAAATCAGATTCTGAGAGCAAGGACCAGAGACCAAACTAGTATAATTGTAATCACAGGATCTCTGCATATTGTTTCGACGGTATTATCCTCTCTCCTTGGTTAA 1611 0.4289 MKIFRVVSHKRTLLGFKRSFSTEPELKDFLNYLDNLKNYEKCGVPKDAGTDSSHGFDLGRMNRLMDRLGNPETGFKAVHIAGTKGKGSTAAFLANILRTEGYAVGCYTSPHVRTIRERISLGKLGEPVSAKALNCLFHRIKPILDEAVALENGRLSHFEILTAMAFKLFAQENVDVAVIEAGLGGARDATNIISSSGLAAAVITTIGEEHLAALGGSLESIAMAKSGIIKQGCPLVLGGPFLPHIEHIFLDKASSMCSPVVSASGPGNRSAVKGVSKSNGKPFQSCDIVIEVERDFKLFIELFDVKLQMLGIHQLQNAATATCVALCLRDKGWRISDESIHAGLEHAYLLGRSQFLTSTEAETLGLPGATIMLDGAHTKESAKALVDTIQMTFPEARLALIVAMASDKDHMAFAREFLSGGQLEAVFLTEVNIAGAKSRTTSASMLRDCWIQASKELGINTLHDGMEEYQKLFENQSFCSAGESKHKTILAAENSLLVSLRVGNQILRARTRDQTSIIVITGSLHIVSTVLSSLLG* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1107 536 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 23 532 IPR001645 GO:0004326|GO:0005524|GO:0009396
Vvi16g1107 536 SUPERFAMILY MurD-like peptide ligases, catalytic domain 54 348 IPR036565 GO:0005524|GO:0009058
Vvi16g1107 536 ProSitePatterns Folylpolyglutamate synthase signature 1. 78 101 IPR018109 GO:0004326|GO:0005524|GO:0009396
Vvi16g1107 536 NCBIfam bifunctional protein FolC 58 532 IPR001645 GO:0004326|GO:0005524|GO:0009396
Vvi16g1107 536 Gene3D - 43 349 IPR036565 GO:0005524|GO:0009058
Vvi16g1107 536 FunFam Dihydrofolate synthetase 44 349 - -
Vvi16g1107 536 Gene3D - 351 535 IPR036615 GO:0009058|GO:0016881
Vvi16g1107 536 Pfam Mur ligase middle domain 80 325 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vvi16g1107 536 ProSitePatterns Folylpolyglutamate synthase signature 2. 178 193 IPR018109 GO:0004326|GO:0005524|GO:0009396
Vvi16g1107 536 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 362 532 IPR036615 GO:0009058|GO:0016881
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1107 Vvi-Chr16 19457067 19462545 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1107 K20457 - vvi:100267405 1046.57