Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1103 ATGGTACGAGAAAAGGATGTTTGTTGGGAATATGCAGAGAAGTTAGATGGAAACAAGGTGAGATGCAAATTTTGCCTTAGAGTTTTAAATGGTGGCATTAGTAGATTGAAGCATCATTTATCCCGGCTTCCCAGTAAAGGTGTAAATCCATGTAGCAAAGTTAGGGATGATGTTACTGATAGAGTGAGGGCCATAATATCATCAAAAGAAGATGGGAAAGAAACTTCTAGTGCTAAGAAGCAAAGAGTAGCAGAAGCTAAATCTCCTGGAAATTACTCTGCAATTAAAGCTCTCATGTCTGTAGAGACACCATCACCAATTGCAAAAATTTTCCCACCAATCACTCACATGGGTCCTTCCTCATCAAATGATGGAGAAAATGCGGAGAGGAGTATTGCTCTGTTCTTTTTTGAAAATAAGCTAGACTTTAGTGTTGCTCGTTCTTCATCCTATCAGCTAATGATAGAAGCAGTATCAAAGTGCGGTCATGGATTTAGAGGCCCATCTGCAGAAATCCTGAAGACTACATGGTTGGAAAGGATTAAGTCTGAAGTGAGCCTACAGTCAAAAGACATTGAGAAGGAGTGGGCTACCACAGGCTGTACCATCATTGCAGACACATGGACAGACAATAAATCAAGAGCTTTGATTAACTTCTTGGTTTCATCACCCTCCAGAACCTTTTTCCATAAATCAGTGGACGCATCCTCATATTTCAAAAACACAAAATATCTTGCTGATTTATTTGATTCTGTTATTCAAGATTTAGGCCCTGATAATGTTGTGCAAATAATCATGGATAGCACTCTCAATTATACTGGTGTAGCTAGCCATATCGTGCAGAACTATGGAACTGTGTTTGTGTCTCCCTGTGCTTCTCAGTGCTTGAATCTGATTTTAGAGGATTTTTGTAAGATAGATTGGGTGAACAGATGTATACTGCAAGCACAGACTATATCAAAGTTTATATATAATAATGCATCAATGCTTGATCTAATGAAGAAATCCACTGGGGGACAAGATCTCATTAGGACTGGTATAACAAAGTCTGTTTCCAACTTCCTCTCATTGCAGTCTATGTTGAAGCAGAGGCCAAGATTGAAGCATATGTTTGGTAGCTCAGAATATTCTACAAACTCTTACTCAAATAAACCACAAAACATATCTTGTATTGCCATTCTTGAAGACAATGATTTCTGGAGGGCAGTGGAAGAGTGTGTGGCGATTTCTGAGCCCTTTCTGAAAGGGTTAAGGGAAGTTTCTGGAGGGAAACCTGCTGTGGGATCTATATATGAGCTAATGACCAAGGCCAAGGAATCAATTAGGACATACTATATTATGGATGAAAGTAAGTGCAAGGCATTTTTAGATATAGTAGATGGAAGGTGGCGGAACCAGCTCCATTCACCTCTACATGCAGCAGCAGCATTTTTGAACCCTAGCATCCAATATAATCCAGAAATCAAATTTATTGGAGCTATAAAAGAAGACTTTTTCAAAGTTCTGGAGAAGCTTCTTCCAACATCTGATATGAGACGTGACATCACAAATCAAATTCTTTTGTTTACAAGGGCGACTGGGATGTTTGGTTGTAACCTAGCAAGGGAAGCACGTGACACAGTCCCACCTGGGCTTTGGTGGGAACAATTTGGCGATTCTGCACCAGTGTTGCAACGAGTTGCCATTAGAATACTCAGTCAAGTTTGCAGCACTTCTACTTTTGAGAGGCACTGGAACACATTCCAGCAGATCCACTCTGAGAAGCGAAATAAGATTGATAAAGAAACATTAAATGATCTTGTGTATATAAATTATAATCTCAAGTTGGCAAGACAAATGAAAATGAAGTCTTCAGAAGCTGATCCTCTCCAATTTGATGACATTGATATGACTTCAGAGTGGGTAGAGGAAACTGAAAACCCAAGCCCTACTCAGTGGCTTGATCGGTTTGGTTCTGCTTTGGATGGGAGTGACTTGAATACAAGACAGTTTAATGCAGCTATATTTGGTTCGAGTGACACCATATTTGGTCTGTGA 2037 0.3972 MVREKDVCWEYAEKLDGNKVRCKFCLRVLNGGISRLKHHLSRLPSKGVNPCSKVRDDVTDRVRAIISSKEDGKETSSAKKQRVAEAKSPGNYSAIKALMSVETPSPIAKIFPPITHMGPSSSNDGENAERSIALFFFENKLDFSVARSSSYQLMIEAVSKCGHGFRGPSAEILKTTWLERIKSEVSLQSKDIEKEWATTGCTIIADTWTDNKSRALINFLVSSPSRTFFHKSVDASSYFKNTKYLADLFDSVIQDLGPDNVVQIIMDSTLNYTGVASHIVQNYGTVFVSPCASQCLNLILEDFCKIDWVNRCILQAQTISKFIYNNASMLDLMKKSTGGQDLIRTGITKSVSNFLSLQSMLKQRPRLKHMFGSSEYSTNSYSNKPQNISCIAILEDNDFWRAVEECVAISEPFLKGLREVSGGKPAVGSIYELMTKAKESIRTYYIMDESKCKAFLDIVDGRWRNQLHSPLHAAAAFLNPSIQYNPEIKFIGAIKEDFFKVLEKLLPTSDMRRDITNQILLFTRATGMFGCNLAREARDTVPPGLWWEQFGDSAPVLQRVAIRILSQVCSTSTFERHWNTFQQIHSEKRNKIDKETLNDLVYINYNLKLARQMKMKSSEADPLQFDDIDMTSEWVEETENPSPTQWLDRFGSALDGSDLNTRQFNAAIFGSSDTIFGL* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1103 678 Pfam BED zinc finger 7 42 IPR003656 GO:0003677
Vvi16g1103 678 PANTHER OSJNBA0013A04.12 PROTEIN 13 610 - -
Vvi16g1103 678 Pfam hAT family C-terminal dimerisation region 537 607 IPR008906 GO:0046983
Vvi16g1103 678 SUPERFAMILY Ribonuclease H-like 190 610 IPR012337 -
Vvi16g1103 678 Pfam Protein of unknown function (DUF 659) 168 319 IPR007021 -
Vvi16g1103 678 ProSiteProfiles Zinc finger BED-type profile. 3 58 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1103 Vvi-Chr16 19382475 19386092 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1103 - - vvi:100265581 1363.59