Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1084 ATGACAGCAATAAATCCTCTTTACCGCCATTTCCCAGCTGTGAAACAGTTACAAACCCTGGTTTTATCAATCCAAAAACCCAAATTCACCCAACAGAATGTTGTTCTTACTGAAAACTTGTGTGGTCAAATACTGGACAAGAACCCAGACATCAAATATTTGAAAAAACTCCACTCCAAGATTTGCATTGATCATGATCTTCACTCAAACCCATCACTTGGCATCAAATTGATGAGAGCTTATGCTGTTTGTGGAGAACCCTGGTCCACTCGCCACATATTCGATGAAATTCCTAAGAAGAATGTTGTTTTCTTTAATGTTATGATAAGAAGTTATGTGAACAACCATTTGTACAGTGATGCTCTTCTTGTTTTCAAGAACATGGCCGGCCATGGGATTGATCCTGACCATTATACGTACCCTTGTGTCTTAAAAGCCTCTTCTGGGTCAGAGGATTTGTGGGTTGGTATGCAAATTCATGCTGCGGTTGTGAGAGTTGGGCTTGACTTGAATGTGTTTGTAGGGAATGGGTTAATTTCCATGTATGGGAAATGTGGTTGTTTGGTGGAGGCTTGTAGAGTTCTTGATCAAATGCCTTGTAGAGATGTTGTTTCATGGAATTCATTGGTTGCCGGTTGTGCACGGAATGGGCAATTTGATGATGCCTTAGAGGTTTGCAAAGAAATGGAGTTGTTGGGTTTGAAACCAGATGCTGGTACAATGGCTAGCCTCTTGCCTGCTGTGACTAATACATGTCTTGACAATGTTTCATTTGTTAAGGAAATGTTCATGAAGTTGGCAAATAAGAGTTTGGTTTCTTGGAATGTGATGATTGCAGTTTACATGAATAATTCTATGCCTGCTGAAGCGGTTGATATATTTTTACAGATGGAAGATCATGCGGTGGACCCTGATGCAATCAGTATTGCTAGTGTGCTTCCTGCTTGCGGGGATCTGTCAGCTCTATTGCTTGGAAGGAGGATTCATGAATACGTTGTTAGGAAGAGGCTTCAGCCAAATTTGCTATTGGAGAATGCCTTGATTGATATGTATGCCAAGTGTGGATGTTTAGAGTATGCAAGGGAAGTGTTTGATCAAATGAAGTTTCGTGATGTTGTGTCATGGACTTCAATGATCTCAGCTTATGGTATGAATGGGAAGGGCCGTGATGCTGTGTCTCTCTTCTCAAGGATGCAAGACTTGGGTCTGAATCCCGACTCCATTGCCTTTGTTTCAGTTCTCTCAGCTTGCAGCCATGCAGGATTATTGGATGAGGGCAGATACTACTTTAAATTAATGACTGAGGAGTGTAAGATAGTTCCACGGATAGAACACTTTGTTTGCATGGTAGATCTGTTAGGACGTGCAGGGCAAGTAGATGAGGCTTATGGTTTCATCAAACAGATGCCAATGGAACCCAATGAAAGAGTTTGGGGGGCTTTGTTGAGTGCTTGTAGGGTGTATTCTAACATGATAATCGGGCTTCTTGCTGCTGATCAACTTTTCCAATTATGTCCTGAGCAGTCAGGCTATTATGTCTTGTTATCCAATATTTATGCAAAGGCAGGTAGATGGGAGGATGTAACAACAGTCAGATCAATCATGAAGACTAAAGGAATCAAGAAAATGCCTGGTGTTAGCAACTTCGAGCTTGACAATCGGGTTCACACCTTTCTTGCTGGTGACCAATCACATCCACAGTCCAAGCAGATCTATGAAGAGCTAGATGTATCAGTAGGGAAGATGAAAGAAGCAGGCTATGTCCCTGAAACAGATTCTGCTCTTCATGATGTCGAAGAGGAGGATAAAGAATGCCACTTAGCAGTTCATAGTGAGAAGTTGGCTATTGCCTTTGCTATTCTAAATACTGCCCCTGGATCACCTATTAGGATTACTAAGAATCTTCGTGTTTGTGGGGATTGCCATATTGCTGCCAAGCTTATTTCCAAGATTGTTGGGCGTGAAATCACTATCAGGGATACTAATCGTTTTCACCATTTCTACAATGGTGTTTGTTCATGTGGTGATTATTGGTGA 2037 0.4163 MTAINPLYRHFPAVKQLQTLVLSIQKPKFTQQNVVLTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1084 678 Gene3D Tetratricopeptide repeat domain 256 321 IPR011990 GO:0005515
Vvi16g1084 678 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Vvi16g1084 678 NCBIfam pentatricopeptide repeat 204 238 IPR002885 -
Vvi16g1084 678 NCBIfam pentatricopeptide repeat 105 136 IPR002885 -
Vvi16g1084 678 NCBIfam pentatricopeptide repeat 373 406 IPR002885 -
Vvi16g1084 678 NCBIfam pentatricopeptide repeat 345 373 IPR002885 -
Vvi16g1084 678 NCBIfam pentatricopeptide repeat 409 441 IPR002885 -
Vvi16g1084 678 NCBIfam pentatricopeptide repeat 176 204 IPR002885 -
Vvi16g1084 678 Pfam E motif 488 548 IPR046848 -
Vvi16g1084 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Vvi16g1084 678 Gene3D Tetratricopeptide repeat domain 322 421 IPR011990 GO:0005515
Vvi16g1084 678 Gene3D Tetratricopeptide repeat domain 155 255 IPR011990 GO:0005515
Vvi16g1084 678 Gene3D Tetratricopeptide repeat domain 22 154 IPR011990 GO:0005515
Vvi16g1084 678 Pfam DYW family of nucleic acid deaminases 586 678 IPR032867 GO:0008270
Vvi16g1084 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Vvi16g1084 678 FunFam Pentatricopeptide repeat-containing protein At2g29760, chloroplastic 386 647 - -
Vvi16g1084 678 FunFam Putative pentatricopeptide repeat-containing protein 158 252 - -
Vvi16g1084 678 Gene3D Tetratricopeptide repeat domain 422 555 IPR011990 GO:0005515
Vvi16g1084 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Vvi16g1084 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Vvi16g1084 678 Pfam PPR repeat 446 470 IPR002885 -
Vvi16g1084 678 Pfam E+ motif 555 576 IPR046849 -
Vvi16g1084 678 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 615 IPR046960 GO:0003723|GO:0009451
Vvi16g1084 678 Pfam PPR repeat family 100 146 IPR002885 -
Vvi16g1084 678 Pfam PPR repeat family 201 246 IPR002885 -
Vvi16g1084 678 Pfam PPR repeat family 270 316 IPR002885 -
Vvi16g1084 678 Pfam PPR repeat family 370 418 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1084 Vvi-Chr16 19205060 19207096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1084 93 678 Glycoside Hydrolase AT3G49170 37.261 2.93e-134 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1084 - - vvi:100248393 1381.31