Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1081 ATGAACCAAAGACAGGTTGGGCGTACAATTGGAGATGACATTCTTTCCTCAGCAGATTCGTACCACTACTTCATTATTTTAAAGGAGAATGAAACAAAGATGGAGCTTCTGAAAGTGGAGCCAAGACCCAAATCAGAACCAGAGAAACCATCACCTTCAGATGAGTATACAGATCTTTGCATTGCCTGGGAGTCATCTCGTGTATCCTGCTGGCTTGAAAGACAGCCTCCTGCAAGAATGGCTAGAACCCCCCAATCCACACCTCTGCTCATCTCCCTCTCAGTCCTAGCCCTCCTCCAGACCTCTTATGCTGGTGGCATCGCCATCTACTGGGGCCAAAACGGCAATGAAGGGACCCTAACCCAAACCTGCAACACCGGAAAATACTCCTACGTTAACATAGCCTTCCTCAACAAGTTCGGTAATGGCCAGACCCCTGAAATCAACCTTGCTGGCCATTGCAACCCTGCTTCCAATGGCTGCACCTCCGTCAGTACCGGCATAAGAAACTGCCAAAATCGAGGCATTAAGGTCATGCTCTCTATAGGTGGTGGGGTTGGAAGTTACTCTCTGTCCTCTTCCAATGATGCCCAAAACGTAGCCAATTATCTGTGGAACAACTTCTTGGGAGGACAATCATCGTCTCGGCCATTAGGTGATGCAGTATTAGATGGCATAGACTTCGACATCGAGCTCGGTTCGACCCTGCACTGGGATGACCTTGCTCGAGCCTTATCAGGTTTCAGCAAGCGTGGAAGGAAGGTATACCTCACTGCAGCCCCTCAATGTCCATTCCCAGATAAGTTCCTGGGCACTGCCCTTAACACAGGCCTTTTTGACTATGTCTGGGTGCAATTCTATAACAATGCCCCATGCCAGTATTCTTCTGGCAACACCAATAACCTTCTGAATTCATGGAACCGGTGGACTTCATCGATAAATTCACGGATCTTCATGGGCCTGCCGGCATCCTCTGCAGCTGCCGGAAGTGGGTTTATTCCGGCCAATGTGTTGACCTCTCAAATTCTTCCGGTCATTAAGAGATCAGCCAAGTATGGAGGCGTGATGCTGTGGTCAAAGTACTATGATGATCAGAGTGGATACAGCTCTTCCATTAAGAGCAGTGTGTGA 1131 0.4872 MNQRQVGRTIGDDILSSADSYHYFIILKENETKMELLKVEPRPKSEPEKPSPSDEYTDLCIAWESSRVSCWLERQPPARMARTPQSTPLLISLSVLALLQTSYAGGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLAGHCNPASNGCTSVSTGIRNCQNRGIKVMLSIGGGVGSYSLSSSNDAQNVANYLWNNFLGGQSSSRPLGDAVLDGIDFDIELGSTLHWDDLARALSGFSKRGRKVYLTAAPQCPFPDKFLGTALNTGLFDYVWVQFYNNAPCQYSSGNTNNLLNSWNRWTSSINSRIFMGLPASSAAAGSGFIPANVLTSQILPVIKRSAKYGGVMLWSKYYDDQSGYSSSIKSSV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1081 376 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 105 376 IPR001223 GO:0005975
Vvi16g1081 376 Gene3D Glycosidases 105 376 - -
Vvi16g1081 376 FunFam Acidic endochitinase SE2 105 376 - -
Vvi16g1081 376 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 223 231 IPR001579 GO:0004553|GO:0005975
Vvi16g1081 376 SUPERFAMILY (Trans)glycosidases 104 372 IPR017853 -
Vvi16g1081 376 PANTHER ENDOCHITINASE 92 374 - -
Vvi16g1081 376 CDD GH18_hevamine_XipI_class_III 105 365 IPR045321 -
Vvi16g1081 376 Pfam Glycosyl hydrolases family 18 107 359 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1081 Vvi-Chr16 19180777 19188753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1081 105 376 Glycoside Hydrolase AT5G24090 72.161 1.51e-152 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1081 K01183 - vvi:100233088 548.125