Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1080 ATGGCTAGAACCCCTCAATCCATACCTCTGCTCATCTCCCTCTCAGTCCTAGCTTTCCTCCAGACCTCTTATGCCGGTGGCATCGCCATCTACTGGGGCCAAAACGGCAATGAAGGGACCCTAACTCAAACCTGCAACACCGGCAAATACTCCTACGTTAACATAGCCTTCCTCAACAAGTTCGGCAATGGCCGGACCCCTGCAATCAACCTTGCAGGCCATTGCAACTCTGCTTCCAATGGCTGCACCTCCGTCAGTAACGGCATAAGAAACTGCCAAAATCGAGGCACTAAGGTCATGCTCTCTATAGGTGGTGGGGTTGGAAATTACTCTCTGTCCTCTTCCTATGATGCCCAAAAAGTTGCCAATTATCTGTGGAACAACTTCTTGGGAGGAAAATCATCGTCTCGGCCATTAGGTGATGCAGTATTAGATGGCGTAGACTTCGACATCGAGCTCGGTTCGACCCAGTACTGGGATAACCTTGCTCGAGCCTTATCGGGTTTCAGCAAGCGTGGAAGGAAGGTATACCTCACTGCAGCCCCTCAATGCCCATTCCAAGATAGGTTCCTGGGCCCTGCCCTTAACACTGGCCTATTTGACTATGTCTGGGTGCAATTCTATAACAATCCCCCATGCCAGTATACTACTGGCAACACCAATAAGCTTCTGAATTCATGGAACCGGTGGACTTCATCGATAAATTCACGGATCTTCTTGGGTTTGCCGGCATCCTCTGCAGCTGCCGGAAGTGGGTTTATTCCGGCCAATGTGTTGACCTCTCGAATTCTTCCGGTCATTAAGAGATCAGCCAAGTATGGAGGCGTGATGCTGTGGTCAAAGTACTATGATGATCAGAGTGGATACAGCTCTAGCATTAAGAGCAGGGTGTGA 894 0.4978 MARTPQSIPLLISLSVLAFLQTSYAGGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGRTPAINLAGHCNSASNGCTSVSNGIRNCQNRGTKVMLSIGGGVGNYSLSSSYDAQKVANYLWNNFLGGKSSSRPLGDAVLDGVDFDIELGSTQYWDNLARALSGFSKRGRKVYLTAAPQCPFQDRFLGPALNTGLFDYVWVQFYNNPPCQYTTGNTNKLLNSWNRWTSSINSRIFLGLPASSAAAGSGFIPANVLTSRILPVIKRSAKYGGVMLWSKYYDDQSGYSSSIKSRV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1080 297 CDD GH18_hevamine_XipI_class_III 26 295 IPR045321 -
Vvi16g1080 297 PANTHER ENDOCHITINASE 12 295 - -
Vvi16g1080 297 SUPERFAMILY (Trans)glycosidases 25 294 IPR017853 -
Vvi16g1080 297 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 297 IPR001223 GO:0005975
Vvi16g1080 297 FunFam Acidic endochitinase SE2 26 297 - -
Vvi16g1080 297 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Vvi16g1080 297 Gene3D Glycosidases 26 297 - -
Vvi16g1080 297 Pfam Glycosyl hydrolases family 18 28 280 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1080 Vvi-Chr16 19171528 19172421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1080 26 297 Glycoside Hydrolase AT5G24090 69.597 7.64e-148 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1080 K01183 - vvi:100263797 604.749