Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1077 ATGGCTCAGGTGGTGGCGACTCGCGCGATTCAGAGCTCGATTCTGTGCCCTAGCTCTGGATCCGTGCATGAGCGATTTGAGAAGCTGAAGCCCTCCGGTTTCGCTGCGAAAGTGTTGGCTCGCGAAGAGCGGAGGAGCCGGAGATTGGCTTGGAGGGGCGGTCCAATTGCGGCGGCGAAGAGATCTGTGGGAGCTGAGACGGAGGTTGTTCCGGTCACACCAGAGGATGCGAAGGGAGAGGAGCAATATCATCTTTTACGGGGAATTCAACAGCTTGGTGAGACATCTGTTGGTATGTGGTCTAAGCCAACGGTTAGACGCAAGACAAAGATTGTTTGCACAATTGGTCCATCCACCAACACACGGGAAATGATATGGAAGCTGGCTGAGGCTGGAATGAATGTCGCCCGCCTGAATATGTCTCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGGGCCCTGAGGTCAGGAGTGGGGACTTGCCCCAGCCAATCATGTTAAAAAGTGGGCAGGAATTCACCTTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGGTGGTATGATGTCATTAATGGTCAAGTCCAAGACTGGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGAAAAGGACTGGGATGATATCAAGTTTGGTGTTGACAATAAAGTGGACTTTTATGCAGTCTCCTTTGTTAAAGATGCAAAAGTAGTCCATGAATTGAAGAACTATCTGAAAAGCTGTAATGCAGATATCCATGTCATTGTTAAAATTGAAAGTGCCGACTCCATTCCCAATCTACATTCAATTATTACCGCATCTGATGGGGCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGGAAGAGATAATCAGGATATGTCGTAGCATGGGAAAAGCTGTTATTGTAGCAACCAATATGCTGGAAAGCATGATTGTTCACCCAACACCAACCCGAGCAGAGGTATCAGACATTGCCATTGCTGTCCGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAAGTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGAAGCAACCTTGGTCGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAGAACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACTCTCAGTACTTCAATAGTTGTTTTCACTAGAACTGGTTTCATGGCTATCCTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAGGAGAGAGTACAACAGAGACTAGCCGTGTACCAAGGGGTATGTCCCATATACATGCAGTTCTCAGACGATGCCGAAGAAACCTTTGCAAATGCCTTGACTTTGTTGCAGAAGCAAGGGATGGTGAAGGAAGGAGAAGAGGTGGCTCTTGTTCAGAGTGGCAGGCAGCCGATCTGGCGGTTCCAATCCACACACAATATCCAGGTCAGGAAAGTTTAA 1731 0.461 MAQVVATRAIQSSILCPSSGSVHERFEKLKPSGFAAKVLAREERRSRRLAWRGGPIAAAKRSVGAETEVVPVTPEDAKGEEQYHLLRGIQQLGETSVGMWSKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLKSGQEFTFTIQRGVGTADCVSVNYDDFVNDVEMGDMLLVDGGMMSLMVKSKTGDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAKVVHELKNYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATLVGSPMPPNLGQAFKNHMSEMFAFHATMMSNTLSTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEERVQQRLAVYQGVCPIYMQFSDDAEETFANALTLLQKQGMVKEGEEVALVQSGRQPIWRFQSTHNIQVRKV* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1077 576 Gene3D - 177 270 IPR015806 GO:0004743|GO:0006096
Vvi16g1077 576 NCBIfam pyruvate kinase 107 575 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 FunFam Pyruvate kinase 272 437 - -
Vvi16g1077 576 PANTHER PYRUVATE KINASE 89 554 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 SUPERFAMILY PK C-terminal domain-like 425 576 IPR036918 -
Vvi16g1077 576 FunFam Pyruvate kinase 177 270 - -
Vvi16g1077 576 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 94 440 IPR015813 GO:0003824
Vvi16g1077 576 Pfam Pyruvate kinase, alpha/beta domain 475 556 IPR015795 -
Vvi16g1077 576 ProSitePatterns Pyruvate kinase active site signature. 317 329 IPR018209 GO:0004743|GO:0006096
Vvi16g1077 576 Gene3D - 449 576 IPR036918 -
Vvi16g1077 576 SUPERFAMILY PK beta-barrel domain-like 176 267 IPR011037 -
Vvi16g1077 576 Pfam Pyruvate kinase, barrel domain 107 441 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 Gene3D - 109 433 IPR040442 -
Vvi16g1077 576 PRINTS Pyruvate kinase family signature 346 370 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 PRINTS Pyruvate kinase family signature 371 395 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 PRINTS Pyruvate kinase family signature 415 431 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 PRINTS Pyruvate kinase family signature 319 345 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 PRINTS Pyruvate kinase family signature 396 414 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 PRINTS Pyruvate kinase family signature 289 303 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 PRINTS Pyruvate kinase family signature 165 181 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g1077 576 FunFam Pyruvate kinase 438 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1077 Vvi-Chr16 19150904 19157096 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1077 K00873 - vvi:100262029 1114.37