Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1075 ATGCCACACAGTGAAGCATTCACAGAGGATGACTGGAAATTGGTCCAGCTTGTTCTTACTTTGTTTCGGAACATTTTAGCTATACAAGACATCTCATTGCAGCAGAAGGCTGGGGAATCTGCCAGTCAATTTTTATCCCTGAGAGACAGATTTTTGGAACTATTGTTCAATGAGAATGTGATGGACTTGATCTTGGTTATTACCCAGAATGTTGGTGGTTCTTCCAAATATTTCCGTCAAGATAACCTGCTTTTATTAGAAATTTTCCATTACATATTTATGGGTCAAGAGCCAGAGTTGCTTGCTAAAGCACATCTAAATTGTTCCAAGGTGGATGGGGACACCAAAACTTCACTTAATGGTCTCAAGTCCATAATAGAAGAGGAGGAAGAAAAAAGAAAACTTTTGAGGATACGGAAGTTAAATCGTTCTTCACAATTTTGTGGAGCCTTTACACGGGTTACCATGGATGGTTCAAAAACGTTTTTCAAGGGAAATCCAACTTTTACTTCTCATGATAAGTTTCTTAAACCTCAAGTTCCACGGGGTCCATTAAAAAAGATTGTGTGGGATCATGGAAGTTTACCTTCAGCGAAGGATAACATTCTGGAGTTGGTCCATGATTTTGTGAACCAGTTTTTGTCAGGAGGCTATAATGTTCTGATGCAGTCTATTTGTGAGGACATTGAAAAAGAACATCATGCAATTCAGAACAGCGATGTGGTTGTTTTCTTTCAGGTTTCTCAGTTCGTTACATCTTTCCAATATCACAAGTTCTTGATCTCTAAGCCAAATAGGGGAATGGATACATCTGAGACATTTGCCAATGAGTATGCTGATAGTACATTTTTCAAAGGCGATATATGTGGACCAATTGCAGCAACAATGAATGAGGCCATGTTTCTGCTTGTAGTTTTGAAGTGGCGTAATGCATTTGATGGCTTGAAGGAGACAAATGACTACAAGTTTCTGTCTGCAGCAGGGTCCCTTATGAAAAATATGATTCGCATGTTAGATTTAGTGCTTAAACTATCACTGGAAGATTCTAAAGAGCCTCAAACAGCTCGAATCCTTCTTTACAAGTTATTTTATGACCAGACTGATCAAGGGATGACTCATTTTCTCTTGAATCTGATCAAATCCTTCGACTCTCATAAACAACCCAAAAGTGATCTTGCAGATTTGGTCGAAATGATATATATAGTTGTACAGCTTATGGAGAATCTTCAGGCTCACGGAACATTAAGGGTACGTTATGTTTTCTTTTGTGGGCTAATCTTGAGTGGGGAATCTGTTAATTTGAGATTATTAAAGAAGAGAACATTGAGTGACAAGAATGAAAATGAAGGAGAACATGGAGATCATGGTGTCATTCAGAATGAAATTGGTGTCTCCAATTGTGGACAATCTGTAGATCTGAACATGTCGCAGAAAGAAAGCTTAGAAAATTCGATTTCTGATGGAAGACAAGAAGCCGTCATACAGATTGAGCCTGAAATACCTGTGCTTGGGACAGGAAACCTTGGAGGCAGTCTGCCACATATGGACGTCCAAAAGGCAAAAAATACTACTGATGATCTTCATTATGGAACTGATGATTCTTCGGGTGATGAGCAGGCAGCTGTGGTTGATGAAGTTGATTTTAAGGTGTCTACCTTGGTTTCTGCTTTTGCAAATAACCATGTTATCCAAAATTTATGTTGGTTGCTTAAGTTTTATAAGAGCAATTCAACCACGACAAATCACTACATTATATGCATTTTGCGGAAGATCTGTGATGATTTGGAGCTCTCTCCAATGCTATACCAGTTATCACTCCTCACCATATTCTACAATATCCTGTGTGAGCAGAAGTCATGTCCATGCAAGGATTATGAAAATATTGTTTGTTTCCTGACAAATTTGGTTAGAAAAATGCTAAGGAAAATGAAAAGTCAACCCCTTCTTTTTGTGGAAGTTCTCTTTTGGAAAACCCGTGGAGAATGCCATTACATCACTTCCCAATCTTTATTGCATGAACTTGGAAGTTTGAAGAAAGAAAGTGGAAAATGGGGAAATATTTCAAGGCATGGAGAAATTGGCTCAACAGAAGGCAAGGGATGGATGCACAGAAGTATAGCAGATGCTCTTGGGGAGGATGAAGCTGATGTTGTCATCTCTCATGAGCCTGTATATCAAAAAAATGATGATAATTTTAGTGAGGCGGAGGAAGGCGTCACTCCTATTTCAAGTAGCAAAATCGATGGGAAGACAAATTCTGATAATGTGGGGCATTATGCGGAACATGAGTCTGAAAGAGTTTCTAAAAGAAAGAGAAGGCTTGTTCTCAGTGCTGAGGTGGAGAAAAACATTAAGGATCTCTATGAGAAATTCAAAGATGATAGACATTGTAGCCGTCTCATTGCGGAAGCCCTTGATCCTGATTGTAAAGTTTCTCCAGTCCAAGTTTCCAATAAGCTTAAGCAGCTAGGTTTGAAAATTGCACCAAAGAAAAGGATGCTCCAAGTTGATGTACCTTTGTCTGATAGCACTAATCAACTAATGGAAGAAGCTAGAGCAGTTGGAGAAGAAAGTGCTCATCTTGTTTGCTCAAACAATTCAGAGGGAAGTTTAGTGAGGAAATCTTTGCATACAAGAAAAAGAGTACGTGCCTTCAGCAAAGATCAGGAGGAAACGATTAGAGCTTTATATGAACAGTTTAAAGGCCATAAAAGGTGCACCTACATGATTGCAAGTGCTCTGGCTGGTGATGATATTCTCACGGCTGCCCAAGTTTCCCGTAAACTTAAGCAACTTGGCTTACATGTTCCTCGACGGAAAAGAGCTGAAGGCAACATGCATTTGAGAGATGAGGATCTTAATGACTTTGATACAGCCAAAGCACAGGATTCTGATGATGAAACATTGTTGTCACTAAGAAAAAGGAGCAAGAAGGAGAATCACAGATTATTGCGTGAAGAGGTACCAGAACAGAATATTGAAGGAAAACTTATGCAAAGTTCCGATGATGAAACCCTAAGCTCTGTTCTGAAGAAAACTAGGAGACTCCCTCCAAAGTTGGATGAGAAGCGTACAAGCACTTCAAATGGGAGATTAGGGATTGATGATCCCTCTGGCAGTGTAGTTGCTAAAGATGTCACGAAAAGGGATGGACACACCCTATCCGATGAGTTGGAAGTTGCTGGAATTGAAGATGATGTTGCTTTCAAGCATGTCAGCTTGGATGACAATTCAGAAGATGAAATTATGGCCTTTAGTAGTGAAAAACAGTTGGGAGCTGCATCCGCCAACAATAGGGATATCTCACCACATCAACAAGTGGCTGACGAGTTGGCTGATTCGGGGGATGACATAGCTTCTAGTGCATTACCAATAAATTCTACAAGTAGAAGAAAGTTGAGGATGGTAATTGATTTCGAGGATGATGAATAA 3432 0.3957 MPHSEAFTEDDWKLVQLVLTLFRNILAIQDISLQQKAGESASQFLSLRDRFLELLFNENVMDLILVITQNVGGSSKYFRQDNLLLLEIFHYIFMGQEPELLAKAHLNCSKVDGDTKTSLNGLKSIIEEEEEKRKLLRIRKLNRSSQFCGAFTRVTMDGSKTFFKGNPTFTSHDKFLKPQVPRGPLKKIVWDHGSLPSAKDNILELVHDFVNQFLSGGYNVLMQSICEDIEKEHHAIQNSDVVVFFQVSQFVTSFQYHKFLISKPNRGMDTSETFANEYADSTFFKGDICGPIAATMNEAMFLLVVLKWRNAFDGLKETNDYKFLSAAGSLMKNMIRMLDLVLKLSLEDSKEPQTARILLYKLFYDQTDQGMTHFLLNLIKSFDSHKQPKSDLADLVEMIYIVVQLMENLQAHGTLRVRYVFFCGLILSGESVNLRLLKKRTLSDKNENEGEHGDHGVIQNEIGVSNCGQSVDLNMSQKESLENSISDGRQEAVIQIEPEIPVLGTGNLGGSLPHMDVQKAKNTTDDLHYGTDDSSGDEQAAVVDEVDFKVSTLVSAFANNHVIQNLCWLLKFYKSNSTTTNHYIICILRKICDDLELSPMLYQLSLLTIFYNILCEQKSCPCKDYENIVCFLTNLVRKMLRKMKSQPLLFVEVLFWKTRGECHYITSQSLLHELGSLKKESGKWGNISRHGEIGSTEGKGWMHRSIADALGEDEADVVISHEPVYQKNDDNFSEAEEGVTPISSSKIDGKTNSDNVGHYAEHESERVSKRKRRLVLSAEVEKNIKDLYEKFKDDRHCSRLIAEALDPDCKVSPVQVSNKLKQLGLKIAPKKRMLQVDVPLSDSTNQLMEEARAVGEESAHLVCSNNSEGSLVRKSLHTRKRVRAFSKDQEETIRALYEQFKGHKRCTYMIASALAGDDILTAAQVSRKLKQLGLHVPRRKRAEGNMHLRDEDLNDFDTAKAQDSDDETLLSLRKRSKKENHRLLREEVPEQNIEGKLMQSSDDETLSSVLKKTRRLPPKLDEKRTSTSNGRLGIDDPSGSVVAKDVTKRDGHTLSDELEVAGIEDDVAFKHVSLDDNSEDEIMAFSSEKQLGAASANNRDISPHQQVADELADSGDDIASSALPINSTSRRKLRMVIDFEDDE* 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1075 1143 Pfam Timeless protein 5 151 IPR006906 -
Vvi16g1075 1143 Coils Coil 119 139 - -
Vvi16g1075 1143 MobiDBLite consensus disorder prediction 1094 1123 - -
Vvi16g1075 1143 MobiDBLite consensus disorder prediction 980 1042 - -
Vvi16g1075 1143 MobiDBLite consensus disorder prediction 1007 1029 - -
Vvi16g1075 1143 PANTHER TIMEOUT/TIMELESS-2 4 1143 IPR044998 -
Vvi16g1075 1143 MobiDBLite consensus disorder prediction 739 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1075 Vvi-Chr16 19135104 19148022 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1075 K03155 - vvi:100246656 2172.13