Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1071 ATGTTGATAATAAGAATTTCATGCAAGATTTTATCTCAGCAGAATAAGATATCTCATATAATTCTCTCTTTTCCTTATTTTACAGGAGTTCTTCCCACTCAACTCGGAAATCTTTCCAACTTGCAATCCCTTGATCTCAGTGATAATTTTGAAATGAGCTGTGAGAACCTTGAGTGGCTTTCTTACCTTCCTTCCTTAACACACCTTGACTTGAGTGGGGTTGATCTTAGTAAAGCAATCCATTGGCCACAAGCAATTAATAAAATGTCTTCTTCCCTAACTGAGTTATACTTGAGCTTTACTAAGCTTCCTTGGATTATTCCAACAATATCCATTTCCCATACTAATTCTTCTACTTCTCTTGCTGTGCTTGATCTCTCCTTGAATGGTCTCACTTCTTCAATAAACCCATGGTTGTTCTACTTTAGTAGCAGCCTTGTTCATCTTGACCTCTTTGGTAATGATCTAAATGGTTCAATTCTAGATGCTCTTGGAAACATGACCAATCTGGCATATCTCGATCTCTCTTTGAATCAACTTGAAGGTGAGATTCCAAAGTCCTTTAGTATCAGCCTTGCTCATTTGGATCTTTCTTGGAACCAGCTGCATGGTTCAATTCCGGATGCTTTTGGAAACATGACTACTCTTGCATATCTTGACCTGTCTTCTAATCATCTAAATGGATCAATTCCGGATGCTTTGGGAAACATGACTACTCTGGCACATCTTTATCTCTCTGCGAATCAACTTGAAGGTGAGATTCCGAAATCCTTGAGAGATTTATGTAATTTACAAATATTATTATTTTTATATTTATCTGAAAATCAATTCAAAGGGTCATTTCCCGATCTTTCTGGATTTTCACAGTTGAGAGAATTATATCTTGGATTCAATCAACTAAATGGAACTTTACCTGAAAGTATTGGACAACTAGCTCAACTTCAAGGGTTGAACATTCGTTCAAATTCCTTGCAAGGAACTGTGTCGGCAAATCACCTTTTTGGTCTCTCCAAACTGTGGGATTTGGACTTGTCATTCAACTACCTAACAGTCAACATAAGCCTTGAGCAATCTAGTTGGGGTTTGCTCCATGTTGATCTCTCAAATAATCAACTATCAGGAGAACTACCCAAATGTTGGGAGCAGTGGAAATATTTAATTGTTCTTAATTTGACAAATAATAATTTTTCTGGGACAATTAAAAATTCGATTGGCATGTTACATCAGATGCAAACATTGCATTTACGTAATAATAGTTTAACTGGAGCACTGCCTTTGTCCTTAAAGAATTGCAGAGATTTGCGTCTTATAGATTTGGGAAAAAATAAATTGTCAGGAAAAATGCCCGCATGGATAGGAGGAAACCTATCAGATTTGATCGTTGTCAACCTAAGATCCAATGAATTTAATGGAAGCATACCTTTAAATCTTTGTCAATTGAAAAAGGTTCAAATGTTGGACCTTTCAAGCAACAATTTATCTGGAATTATACCAAAATGTCTCAACAATTTAACTGCCATGGGTCAAAATGGGAGTTTGGTCATTGCTTATGAAGAAAGATTGTTTGTTTTTGATTCATCAATATCCTATATTGATAATACAGTGGTTCAATGGAAAGGAAAAGAACTAGAGTATAAGAAAACTCTTAGACTTGTAAAGAGCATTGATTTTTCGAATAACAAGTTAAATGGAGAAATTCCGATAGAAGTAACTGATTTGGTAGAATTGTTGTCATTGAACTTATCAAAAAACAATTTGATTGGATCTATCCCTTTGATGATTGGTCAATTGAAATCATTGGATTTTCTTGATCTATCACAAAATCAGCTTCATGGTGGAATCCCTGTCAGTCTTTCTCAAATAGCAGGTCTAAGTGTTTTAGACCTATCAGATAACATCCTATCGGGTAAAATTCCATCAGGCACCCAATTGCACAGTTTTAATGCTTCCACATACGACGGAAATCCAGGACTTTGTGGGCCACCGCTTTTGAAAAAATGTCAAGAAGATGAAACTAAGGAAGTCTCCTTCACTAGTCTTATTAATGAAAAGGATATTCAAGATGATACAAATAATATATGGTTTTATGGAAATATTGTTCTTGGATTCATCATTGGATTTTGGGGAGTTTGCGGCACTTTATTACTCAACCGTTCATGGAGATATTCCTATTTCCAGACCCTGAACAAGATAAAAGACTGGTTGCACATGACAACAACAACAAATATAAATAGACTACGGAGGAGTTTCTAA 2253 0.3569 MLIIRISCKILSQQNKISHIILSFPYFTGVLPTQLGNLSNLQSLDLSDNFEMSCENLEWLSYLPSLTHLDLSGVDLSKAIHWPQAINKMSSSLTELYLSFTKLPWIIPTISISHTNSSTSLAVLDLSLNGLTSSINPWLFYFSSSLVHLDLFGNDLNGSILDALGNMTNLAYLDLSLNQLEGEIPKSFSISLAHLDLSWNQLHGSIPDAFGNMTTLAYLDLSSNHLNGSIPDALGNMTTLAHLYLSANQLEGEIPKSLRDLCNLQILLFLYLSENQFKGSFPDLSGFSQLRELYLGFNQLNGTLPESIGQLAQLQGLNIRSNSLQGTVSANHLFGLSKLWDLDLSFNYLTVNISLEQSSWGLLHVDLSNNQLSGELPKCWEQWKYLIVLNLTNNNFSGTIKNSIGMLHQMQTLHLRNNSLTGALPLSLKNCRDLRLIDLGKNKLSGKMPAWIGGNLSDLIVVNLRSNEFNGSIPLNLCQLKKVQMLDLSSNNLSGIIPKCLNNLTAMGQNGSLVIAYEERLFVFDSSISYIDNTVVQWKGKELEYKKTLRLVKSIDFSNNKLNGEIPIEVTDLVELLSLNLSKNNLIGSIPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFNASTYDGNPGLCGPPLLKKCQEDETKEVSFTSLINEKDIQDDTNNIWFYGNIVLGFIIGFWGVCGTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLRRSF* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1071 750 Pfam Leucine rich repeat 18 73 IPR001611 GO:0005515
Vvi16g1071 750 Pfam Leucine rich repeat 191 250 IPR001611 GO:0005515
Vvi16g1071 750 Pfam Leucine rich repeat 288 349 IPR001611 GO:0005515
Vvi16g1071 750 SUPERFAMILY L domain-like 6 377 - -
Vvi16g1071 750 FunFam Tyrosine-sulfated glycopeptide receptor 1 431 672 - -
Vvi16g1071 750 Gene3D Ribonuclease Inhibitor 362 676 IPR032675 -
Vvi16g1071 750 PRINTS Leucine-rich repeat signature 216 229 - -
Vvi16g1071 750 PRINTS Leucine-rich repeat signature 597 610 - -
Vvi16g1071 750 Pfam Leucine Rich Repeat 484 504 IPR001611 GO:0005515
Vvi16g1071 750 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 114 378 - -
Vvi16g1071 750 SUPERFAMILY L domain-like 361 664 - -
Vvi16g1071 750 SMART LRR_typ_2 480 503 IPR003591 -
Vvi16g1071 750 SMART LRR_typ_2 573 597 IPR003591 -
Vvi16g1071 750 SMART LRR_typ_2 213 237 IPR003591 -
Vvi16g1071 750 SMART LRR_typ_2 287 311 IPR003591 -
Vvi16g1071 750 SMART LRR_typ_2 167 190 IPR003591 -
Vvi16g1071 750 SMART LRR_typ_2 407 430 IPR003591 -
Vvi16g1071 750 SMART LRR_typ_2 191 212 IPR003591 -
Vvi16g1071 750 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 13 103 - -
Vvi16g1071 750 Gene3D Ribonuclease Inhibitor 267 361 IPR032675 -
Vvi16g1071 750 ProSiteProfiles Leucine-rich repeat profile. 40 61 IPR001611 GO:0005515
Vvi16g1071 750 Gene3D Ribonuclease Inhibitor 4 266 IPR032675 -
Vvi16g1071 750 SMART LRR_sd22_2 38 59 - -
Vvi16g1071 750 SMART LRR_sd22_2 597 626 - -
Vvi16g1071 750 SMART LRR_sd22_2 336 357 - -
Vvi16g1071 750 SMART LRR_sd22_2 287 313 - -
Vvi16g1071 750 SMART LRR_sd22_2 480 506 - -
Vvi16g1071 750 SMART LRR_sd22_2 237 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1071 Vvi-Chr16 19098149 19101465 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1071 22 673 Receptor kinase-like Gene Family AT5G25910 34.361 1.71e-84 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1071 - K13466 vvi:100262023 880.167