Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1069 ATGGTGGGTGATGCTAAAGTTGGGTGCACAGAGAGGGAGAGACAGGCTCTCCTTCACTTCAAACAAGGCCTTGTCCATGACTATAGAGTTCTTTCTTCATGGGGGAATGAGGAAGACAAAAGAGATTGTTGCAAATGGAGAGGAGTGGAGTGTAACAACCAGACGGGTCATGTGATCAGCCTTGATCTTCATGGAACGGATTTTGTCCGATATTTGGGAGGTAAGATTGACCCTTCACTGGCAGAGTTGCAGCACTTGAAGCATTTGAACCTTAGCTTCAACCGGTTTGAAGGAGTTCTTCCCACTCAACTCGGAAATCTTTCCAACTTGCAATCCCTTGATCTCGCCTATAATTTGGGAATGACCTGTGGAAACCTTGACTGGCTTTCTCGTCTTCCTTTGTTAACACACCTTGACTTGAGTGGGGTTGATCTTAGTAAAGCAATCCATTGGCCACAAGCAATTAATAAAATGCCTTCCCTAACTGAGTTATACTTGAGCCATACTCAGCTTCCTTGGATTATTCCAACAATATTCATTTCCCATACTAATTCTTCTACTTCTCTTGCTGTGCTTGATCTCTCCAGGAATGGTCTCACTTCTTCAATATACCCATGGTTGTTCAACTTCAGTAGTAGCCTTCTTCATCTTGACCTCTCTTATAACCATCTAAATGGTTCATTTCCGGATGCATTTACGAACATGGTTTTTCTGGAATCTTTTGTTCTCTCTCGGAATGAACTTGAAGGTGAGATTCCGAAGTTCTTTAGTGTCAGTTTCGTTCATTTGGATCTTTCTGGGAACCAGCTACATGGTTTAATTCCAGATGCTTTTGGAAACATGACTATTCTCGCATATCTTGATCTCTCCTCCAATCAACTTAAAGGTGAGATTCCGAAATCCTTGAGTACCAGCGTTGTTCATTTGGACCTTTCTTGGAACTTGCTGCATGGTTCAATTCCAGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGATCTCTCTTCCAATCACCTTGAAGGTGAGATTCCGAAATCCTTGAGTACCAGCTTTGTTCATTTGGATCTTTCTTGGAACCAGCTGCATGGTTCGATTCTTGATGCTTTTGGAAACATGACTACTCTGGCATATCTAGATCTCTCTTCGAATCAACTCGAAGGTGAGATTCCGAAATCCTTGAGTACCAGCTTTGTTCATCTTGGCCTCTCTTATAATCATCTCCAGGGTTCAATTCCGGATGCTTTTGGAAACATGACTGCTCTGGCATATCTTCATCTCTCTTGGAATCAACTTGAAGATTTTGGAAGAAATAAATTATCCGGAAACGTACCTGCATGGATGGGAAGCCTATCAAGTTTGATTGTTCTCAACCTAAGATCCAATGAATTTAATGGAAACATACCTTTAAATCTATGTCAACTAAAAAAGATTCAAATGTTGGACCTCTCAAGCAACAATCTATTTGGTACCATACCAAAATGTCTCAACGATTTAATTGCTTTAACTCAGAAAGGGAGTTTGGTCATTGCTTATAACGAAAGACAGTTTCATTCAGGTTGGGATTTCTCCTATATTGATGATACATTGATTCAATGGAAAGGAAAAGAGTTAGAGTACAAGAAAACTCTTGGGCTTATAAGGAGCATTGATTTTTCAAACAACAAATTAATCGGAGAAATTCCTGTAGAGGTAACCGATTTGGTAGAATTGGTGTCATTGAACTTATCAAGAAACAATTTGACTGGATCTATTCCTTCTATGATTGGTCAATTGAAATCATTGGATTTTCTTGATCTATCTCAAAACCAGCTTCATGGTAGAATTCCTGCTAGTCTTTCTCAAATAGCCGATCTAAGTGTTTTAGACCTATCAAATAACAACTTATCAGGCAAAATTCCATCAGGCACTCAATTACAAAGCTTTAGTGCCTCCACATACCAAGGAAATCCTAGACTTTGTGGGCCTCCACTCTTGAAGAAGTGTCTAGGAGATGAAACTAAGGAAGCCTCCTTCATTGATCCAAGTAACAGAGACAACATTCAAGATGACGCAAATAAGATATGGTTTTCTGGAAGTATTGTTCTTGGATTCATCATCGGATTTTGGGGAGTTTGTGGCACTTTACTACTCAATAGTTCATGGAGACATGCCTATTTCCAGTTCTTGAACAAGATAAAAGATCGGTTGTACATGACAACAACAACAATAACTATGAATAGACTACGGAGGAGTTTCCAAAGTTAA 2247 0.3965 MVGDAKVGCTERERQALLHFKQGLVHDYRVLSSWGNEEDKRDCCKWRGVECNNQTGHVISLDLHGTDFVRYLGGKIDPSLAELQHLKHLNLSFNRFEGVLPTQLGNLSNLQSLDLAYNLGMTCGNLDWLSRLPLLTHLDLSGVDLSKAIHWPQAINKMPSLTELYLSHTQLPWIIPTIFISHTNSSTSLAVLDLSRNGLTSSIYPWLFNFSSSLLHLDLSYNHLNGSFPDAFTNMVFLESFVLSRNELEGEIPKFFSVSFVHLDLSGNQLHGLIPDAFGNMTILAYLDLSSNQLKGEIPKSLSTSVVHLDLSWNLLHGSIPDAFGNMTTLAYLDLSSNHLEGEIPKSLSTSFVHLDLSWNQLHGSILDAFGNMTTLAYLDLSSNQLEGEIPKSLSTSFVHLGLSYNHLQGSIPDAFGNMTALAYLHLSWNQLEDFGRNKLSGNVPAWMGSLSSLIVLNLRSNEFNGNIPLNLCQLKKIQMLDLSSNNLFGTIPKCLNDLIALTQKGSLVIAYNERQFHSGWDFSYIDDTLIQWKGKELEYKKTLGLIRSIDFSNNKLIGEIPVEVTDLVELVSLNLSRNNLTGSIPSMIGQLKSLDFLDLSQNQLHGRIPASLSQIADLSVLDLSNNNLSGKIPSGTQLQSFSASTYQGNPRLCGPPLLKKCLGDETKEASFIDPSNRDNIQDDANKIWFSGSIVLGFIIGFWGVCGTLLLNSSWRHAYFQFLNKIKDRLYMTTTTITMNRLRRSFQS* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1069 748 Coils Coil 739 748 - -
Vvi16g1069 748 PRINTS Leucine-rich repeat signature 592 605 - -
Vvi16g1069 748 PRINTS Leucine-rich repeat signature 284 297 - -
Vvi16g1069 748 Gene3D Ribonuclease Inhibitor 305 434 IPR032675 -
Vvi16g1069 748 Gene3D Ribonuclease Inhibitor 9 183 IPR032675 -
Vvi16g1069 748 Gene3D Ribonuclease Inhibitor 184 258 IPR032675 -
Vvi16g1069 748 Gene3D Ribonuclease Inhibitor 435 671 IPR032675 -
Vvi16g1069 748 FunFam Uncharacterized protein 9 180 - -
Vvi16g1069 748 Gene3D Ribonuclease Inhibitor 259 304 IPR032675 -
Vvi16g1069 748 FunFam Tyrosine-sulfated glycopeptide receptor 1 522 667 - -
Vvi16g1069 748 SMART LRR_typ_2 568 591 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 592 616 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 281 305 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 83 106 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 212 234 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 373 397 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 451 475 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 327 351 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 419 442 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 261 280 IPR003591 -
Vvi16g1069 748 SMART LRR_typ_2 158 181 IPR003591 -
Vvi16g1069 748 PANTHER LRR RECEPTOR-LIKE KINASE 330 414 - -
Vvi16g1069 748 Pfam Leucine rich repeat 85 142 IPR001611 GO:0005515
Vvi16g1069 748 Pfam Leucine rich repeat 262 316 IPR001611 GO:0005515
Vvi16g1069 748 Pfam Leucine rich repeat 570 629 IPR001611 GO:0005515
Vvi16g1069 748 Pfam Leucine rich repeat 188 248 IPR001611 GO:0005515
Vvi16g1069 748 SUPERFAMILY L domain-like 9 254 - -
Vvi16g1069 748 Pfam Leucine rich repeat N-terminal domain 12 52 IPR013210 -
Vvi16g1069 748 ProSiteProfiles Leucine-rich repeat profile. 618 640 IPR001611 GO:0005515
Vvi16g1069 748 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 185 435 - -
Vvi16g1069 748 SUPERFAMILY L domain-like 202 642 - -
Vvi16g1069 748 Pfam Leucine Rich repeat 327 343 IPR001611 GO:0005515
Vvi16g1069 748 Pfam Leucine Rich repeat 373 389 IPR001611 GO:0005515
Vvi16g1069 748 Pfam Leucine Rich repeat 349 370 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1069 Vvi-Chr16 19082053 19085375 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1069 13 663 Receptor kinase-like Gene Family AT5G25910 32.800 2.75e-87 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1069 - K13466 vri:117933818 932.939